Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14680

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14675 and AO353_14680 are separated by 123 nucleotidesAO353_14680 and AO353_14685 are separated by 116 nucleotides AO353_14675: AO353_14675 - hypothetical protein, at 3,251,270 to 3,252,373 _14675 AO353_14680: AO353_14680 - tRNA-Met, at 3,252,497 to 3,252,573 _14680 AO353_14685: AO353_14685 - chemotaxis protein, at 3,252,690 to 3,254,747 _14685 Position (kb) 3252 3253Strain fitness (log2 ratio) -2 -1 0 1 2at 3251.678 kb on + strand, within AO353_14675at 3251.678 kb on + strand, within AO353_14675at 3251.678 kb on + strand, within AO353_14675at 3251.678 kb on + strand, within AO353_14675at 3251.679 kb on - strand, within AO353_14675at 3251.679 kb on - strand, within AO353_14675at 3251.699 kb on + strand, within AO353_14675at 3251.699 kb on + strand, within AO353_14675at 3251.699 kb on + strand, within AO353_14675at 3251.699 kb on + strand, within AO353_14675at 3251.699 kb on + strand, within AO353_14675at 3251.700 kb on - strand, within AO353_14675at 3251.700 kb on - strand, within AO353_14675at 3251.700 kb on - strand, within AO353_14675at 3251.700 kb on - strand, within AO353_14675at 3251.715 kb on + strand, within AO353_14675at 3251.716 kb on - strand, within AO353_14675at 3251.716 kb on - strand, within AO353_14675at 3251.716 kb on - strand, within AO353_14675at 3251.763 kb on + strand, within AO353_14675at 3251.763 kb on + strand, within AO353_14675at 3251.763 kb on + strand, within AO353_14675at 3251.764 kb on - strand, within AO353_14675at 3251.764 kb on - strand, within AO353_14675at 3251.764 kb on - strand, within AO353_14675at 3251.764 kb on - strand, within AO353_14675at 3251.837 kb on + strand, within AO353_14675at 3251.838 kb on - strand, within AO353_14675at 3251.838 kb on - strand, within AO353_14675at 3251.951 kb on + strand, within AO353_14675at 3251.951 kb on + strand, within AO353_14675at 3251.952 kb on - strand, within AO353_14675at 3251.990 kb on + strand, within AO353_14675at 3251.990 kb on + strand, within AO353_14675at 3251.991 kb on - strand, within AO353_14675at 3251.991 kb on - strand, within AO353_14675at 3252.020 kb on + strand, within AO353_14675at 3252.021 kb on - strand, within AO353_14675at 3252.021 kb on - strand, within AO353_14675at 3252.035 kb on + strand, within AO353_14675at 3252.035 kb on + strand, within AO353_14675at 3252.035 kb on + strand, within AO353_14675at 3252.036 kb on - strand, within AO353_14675at 3252.036 kb on - strand, within AO353_14675at 3252.036 kb on - strand, within AO353_14675at 3252.036 kb on - strand, within AO353_14675at 3252.036 kb on - strand, within AO353_14675at 3252.036 kb on - strand, within AO353_14675at 3252.098 kb on + strand, within AO353_14675at 3252.099 kb on - strand, within AO353_14675at 3252.114 kb on + strand, within AO353_14675at 3252.114 kb on + strand, within AO353_14675at 3252.114 kb on + strand, within AO353_14675at 3252.114 kb on + strand, within AO353_14675at 3252.115 kb on - strand, within AO353_14675at 3252.115 kb on - strand, within AO353_14675at 3252.170 kb on + strand, within AO353_14675at 3252.171 kb on - strand, within AO353_14675at 3252.284 kb on + strandat 3252.284 kb on + strandat 3252.336 kb on + strandat 3252.337 kb on - strandat 3252.337 kb on - strandat 3252.369 kb on + strandat 3252.369 kb on + strandat 3252.369 kb on + strandat 3252.369 kb on + strandat 3252.369 kb on + strandat 3252.370 kb on - strandat 3252.370 kb on - strandat 3252.371 kb on + strandat 3252.371 kb on + strandat 3252.371 kb on + strandat 3252.372 kb on - strandat 3252.372 kb on - strandat 3252.372 kb on - strandat 3252.372 kb on - strandat 3252.456 kb on + strandat 3252.457 kb on - strandat 3252.457 kb on - strandat 3252.637 kb on - strandat 3252.724 kb on - strandat 3252.724 kb on - strandat 3252.724 kb on - strandat 3252.858 kb on + strandat 3252.859 kb on - strandat 3253.475 kb on + strand, within AO353_14685at 3253.475 kb on + strand, within AO353_14685at 3253.475 kb on + strand, within AO353_14685at 3253.476 kb on - strand, within AO353_14685at 3253.476 kb on - strand, within AO353_14685

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,251,678 + AO353_14675 0.37 +0.6
3,251,678 + AO353_14675 0.37 -0.3
3,251,678 + AO353_14675 0.37 -0.6
3,251,678 + AO353_14675 0.37 +0.5
3,251,679 - AO353_14675 0.37 +0.5
3,251,679 - AO353_14675 0.37 -1.5
3,251,699 + AO353_14675 0.39 +1.4
3,251,699 + AO353_14675 0.39 -0.5
3,251,699 + AO353_14675 0.39 -0.9
3,251,699 + AO353_14675 0.39 -0.4
3,251,699 + AO353_14675 0.39 +0.4
3,251,700 - AO353_14675 0.39 -1.3
3,251,700 - AO353_14675 0.39 +0.5
3,251,700 - AO353_14675 0.39 -0.3
3,251,700 - AO353_14675 0.39 +0.4
3,251,715 + AO353_14675 0.40 +1.5
3,251,716 - AO353_14675 0.40 -0.2
3,251,716 - AO353_14675 0.40 -1.0
3,251,716 - AO353_14675 0.40 +0.2
3,251,763 + AO353_14675 0.45 +0.4
3,251,763 + AO353_14675 0.45 +0.7
3,251,763 + AO353_14675 0.45 +0.5
3,251,764 - AO353_14675 0.45 -0.6
3,251,764 - AO353_14675 0.45 +0.4
3,251,764 - AO353_14675 0.45 +0.0
3,251,764 - AO353_14675 0.45 +0.4
3,251,837 + AO353_14675 0.51 +0.4
3,251,838 - AO353_14675 0.51 +0.1
3,251,838 - AO353_14675 0.51 +0.3
3,251,951 + AO353_14675 0.62 +0.1
3,251,951 + AO353_14675 0.62 +0.5
3,251,952 - AO353_14675 0.62 -1.1
3,251,990 + AO353_14675 0.65 -0.6
3,251,990 + AO353_14675 0.65 -1.7
3,251,991 - AO353_14675 0.65 +1.8
3,251,991 - AO353_14675 0.65 -1.3
3,252,020 + AO353_14675 0.68 +0.9
3,252,021 - AO353_14675 0.68 +0.1
3,252,021 - AO353_14675 0.68 -0.9
3,252,035 + AO353_14675 0.69 +1.3
3,252,035 + AO353_14675 0.69 -1.6
3,252,035 + AO353_14675 0.69 +0.5
3,252,036 - AO353_14675 0.69 -0.8
3,252,036 - AO353_14675 0.69 +0.2
3,252,036 - AO353_14675 0.69 +1.6
3,252,036 - AO353_14675 0.69 +0.4
3,252,036 - AO353_14675 0.69 -1.3
3,252,036 - AO353_14675 0.69 -0.7
3,252,098 + AO353_14675 0.75 -0.1
3,252,099 - AO353_14675 0.75 -1.0
3,252,114 + AO353_14675 0.76 +1.9
3,252,114 + AO353_14675 0.76 +0.0
3,252,114 + AO353_14675 0.76 +0.5
3,252,114 + AO353_14675 0.76 -0.3
3,252,115 - AO353_14675 0.77 +0.6
3,252,115 - AO353_14675 0.77 +0.1
3,252,170 + AO353_14675 0.82 +0.3
3,252,171 - AO353_14675 0.82 +0.7
3,252,284 + -0.3
3,252,284 + -1.9
3,252,336 + -0.6
3,252,337 - -2.0
3,252,337 - +0.4
3,252,369 + +0.2
3,252,369 + -0.1
3,252,369 + +1.5
3,252,369 + -1.9
3,252,369 + -0.4
3,252,370 - -1.3
3,252,370 - +0.4
3,252,371 + +0.3
3,252,371 + -0.1
3,252,371 + +1.9
3,252,372 - +0.0
3,252,372 - +1.2
3,252,372 - +0.4
3,252,372 - +1.2
3,252,456 + -1.1
3,252,457 - -0.1
3,252,457 - -1.4
3,252,637 - -1.4
3,252,724 - +0.9
3,252,724 - +1.0
3,252,724 - -1.5
3,252,858 + +0.3
3,252,859 - +1.0
3,253,475 + AO353_14685 0.38 +1.9
3,253,475 + AO353_14685 0.38 +0.2
3,253,475 + AO353_14685 0.38 +0.1
3,253,476 - AO353_14685 0.38 +1.2
3,253,476 - AO353_14685 0.38 -0.4

Or see this region's nucleotide sequence