Strain Fitness in Shewanella loihica PV-4 around Shew_3716

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3715 and Shew_3716 are separated by 168 nucleotidesShew_3716 and Shew_3717 are separated by 774 nucleotides Shew_3715: Shew_3715 - GTPase EngB (RefSeq), at 4,421,920 to 4,422,576 _3715 Shew_3716: Shew_3716 - cytochrome c, class I (RefSeq), at 4,422,745 to 4,423,365 _3716 Shew_3717: Shew_3717 - hypothetical protein (RefSeq), at 4,424,140 to 4,424,808 _3717 Position (kb) 4422 4423 4424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4421.846 kb on - strandat 4421.846 kb on - strandat 4422.638 kb on - strandat 4422.660 kb on - strandat 4422.660 kb on - strandat 4422.660 kb on - strandat 4422.660 kb on - strandat 4422.660 kb on - strandat 4422.660 kb on - strandat 4422.660 kb on - strandat 4422.702 kb on - strandat 4422.816 kb on - strand, within Shew_3716at 4422.881 kb on - strand, within Shew_3716at 4423.174 kb on + strand, within Shew_3716at 4423.391 kb on + strandat 4423.491 kb on + strandat 4423.502 kb on + strandat 4423.502 kb on + strandat 4423.510 kb on - strandat 4423.656 kb on + strandat 4423.664 kb on - strandat 4423.664 kb on - strandat 4423.675 kb on + strandat 4423.675 kb on + strandat 4423.683 kb on - strandat 4423.683 kb on - strandat 4423.683 kb on - strandat 4423.683 kb on - strandat 4423.699 kb on - strandat 4423.732 kb on + strandat 4423.732 kb on + strandat 4423.732 kb on + strandat 4423.734 kb on + strandat 4423.740 kb on - strandat 4423.740 kb on - strandat 4423.740 kb on - strandat 4423.740 kb on - strandat 4423.742 kb on + strandat 4423.747 kb on + strandat 4423.750 kb on - strandat 4423.750 kb on - strandat 4423.750 kb on - strandat 4423.750 kb on - strandat 4423.750 kb on - strandat 4423.755 kb on - strandat 4423.773 kb on + strandat 4423.823 kb on + strandat 4423.856 kb on + strandat 4423.864 kb on - strandat 4423.960 kb on - strandat 4424.019 kb on + strandat 4424.116 kb on + strandat 4424.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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4,421,846 - -1.0
4,421,846 - -0.5
4,422,638 - -3.0
4,422,660 - -3.0
4,422,660 - -2.3
4,422,660 - -2.8
4,422,660 - -4.3
4,422,660 - -4.2
4,422,660 - -3.2
4,422,660 - -1.9
4,422,702 - -3.8
4,422,816 - Shew_3716 0.11 -3.1
4,422,881 - Shew_3716 0.22 -2.6
4,423,174 + Shew_3716 0.69 -2.5
4,423,391 + -1.3
4,423,491 + -0.7
4,423,502 + -1.0
4,423,502 + +0.2
4,423,510 - +0.9
4,423,656 + -1.4
4,423,664 - -0.1
4,423,664 - -0.7
4,423,675 + -0.3
4,423,675 + -1.0
4,423,683 - +0.4
4,423,683 - -0.7
4,423,683 - -0.1
4,423,683 - +0.1
4,423,699 - -0.4
4,423,732 + -0.3
4,423,732 + -0.3
4,423,732 + +2.5
4,423,734 + -0.2
4,423,740 - -0.4
4,423,740 - -1.8
4,423,740 - +0.2
4,423,740 - +0.5
4,423,742 + -1.6
4,423,747 + -0.9
4,423,750 - +1.0
4,423,750 - +0.1
4,423,750 - +1.6
4,423,750 - +0.2
4,423,750 - -0.5
4,423,755 - -0.4
4,423,773 + -0.6
4,423,823 + -1.7
4,423,856 + -0.7
4,423,864 - +0.3
4,423,960 - -0.6
4,424,019 + -1.5
4,424,116 + +0.5
4,424,145 + +0.6

Or see this region's nucleotide sequence