Strain Fitness in Shewanella loihica PV-4 around Shew_3424

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3423 and Shew_3424 are separated by 109 nucleotidesShew_3424 and Shew_3425 are separated by 413 nucleotides Shew_3423: Shew_3423 - anti-RNA polymerase sigma 70 factor (RefSeq), at 4,078,894 to 4,079,364 _3423 Shew_3424: Shew_3424 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq), at 4,079,474 to 4,082,071 _3424 Shew_3425: Shew_3425 - 2-deoxyglucose-6-phosphatase (RefSeq), at 4,082,485 to 4,083,156 _3425 Position (kb) 4079 4080 4081 4082 4083Strain fitness (log2 ratio) -1 0 1at 4078.589 kb on - strandat 4078.897 kb on - strandat 4078.970 kb on + strand, within Shew_3423at 4082.575 kb on + strand, within Shew_3425at 4082.615 kb on - strand, within Shew_3425at 4082.624 kb on + strand, within Shew_3425at 4082.624 kb on + strand, within Shew_3425at 4082.632 kb on - strand, within Shew_3425at 4082.732 kb on + strand, within Shew_3425at 4083.051 kb on - strand, within Shew_3425

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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4,078,589 - +0.3
4,078,897 - -0.6
4,078,970 + Shew_3423 0.16 -0.4
4,082,575 + Shew_3425 0.13 +0.0
4,082,615 - Shew_3425 0.19 -1.0
4,082,624 + Shew_3425 0.21 -0.4
4,082,624 + Shew_3425 0.21 +0.3
4,082,632 - Shew_3425 0.22 +0.0
4,082,732 + Shew_3425 0.37 +0.4
4,083,051 - Shew_3425 0.84 +1.2

Or see this region's nucleotide sequence