Strain Fitness in Shewanella loihica PV-4 around Shew_3328

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3327 and Shew_3328 are separated by 476 nucleotidesShew_3328 and Shew_3329 are separated by 250 nucleotides Shew_3327: Shew_3327 - RNA-metabolising metallo-beta-lactamase (RefSeq), at 3,967,766 to 3,969,211 _3327 Shew_3328: Shew_3328 - Ig domain-containing protein (RefSeq), at 3,969,688 to 3,972,324 _3328 Shew_3329: Shew_3329 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 3,972,575 to 3,974,506 _3329 Position (kb) 3969 3970 3971 3972 3973Strain fitness (log2 ratio) -1 0 1at 3968.982 kb on - strand, within Shew_3327at 3969.106 kb on + strandat 3969.269 kb on + strandat 3969.682 kb on + strandat 3970.487 kb on + strand, within Shew_3328at 3970.829 kb on + strand, within Shew_3328at 3971.707 kb on - strand, within Shew_3328at 3971.836 kb on + strand, within Shew_3328at 3971.936 kb on - strand, within Shew_3328at 3971.946 kb on - strand, within Shew_3328at 3972.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,968,982 - Shew_3327 0.84 -0.2
3,969,106 + +0.6
3,969,269 + +0.2
3,969,682 + +0.9
3,970,487 + Shew_3328 0.30 +0.7
3,970,829 + Shew_3328 0.43 +1.2
3,971,707 - Shew_3328 0.77 +1.3
3,971,836 + Shew_3328 0.81 +1.3
3,971,936 - Shew_3328 0.85 +0.9
3,971,946 - Shew_3328 0.86 -0.4
3,972,289 - +0.0

Or see this region's nucleotide sequence