Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3251 and Shew_3252 are separated by 367 nucleotides Shew_3252 and Shew_3253 are separated by 113 nucleotides Shew_3253 and Shew_3254 are separated by 162 nucleotides
Shew_3251: Shew_3251 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 3,888,897 to 3,889,709
_3251
Shew_3252: Shew_3252 - porin (RefSeq), at 3,890,077 to 3,891,135
_3252
Shew_3253: Shew_3253 - hypothetical protein (RefSeq), at 3,891,249 to 3,891,512
_3253
Shew_3254: Shew_3254 - cytochrome c family protein (RefSeq), at 3,891,675 to 3,892,235
_3254
Position (kb)
3890
3891
3892 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3889.341 kb on - strand, within Shew_3251 at 3889.540 kb on - strand, within Shew_3251 at 3889.703 kb on + strand at 3889.792 kb on + strand at 3889.834 kb on + strand at 3889.842 kb on - strand at 3889.934 kb on - strand at 3889.972 kb on + strand at 3890.011 kb on - strand at 3890.352 kb on - strand, within Shew_3252 at 3890.445 kb on - strand, within Shew_3252 at 3890.874 kb on + strand, within Shew_3252 at 3890.876 kb on - strand, within Shew_3252 at 3891.118 kb on - strand at 3891.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 3,889,341 - Shew_3251 0.55 +0.9 3,889,540 - Shew_3251 0.79 +0.3 3,889,703 + +1.4 3,889,792 + +2.8 3,889,834 + +0.8 3,889,842 - +0.3 3,889,934 - +0.4 3,889,972 + -0.2 3,890,011 - -0.2 3,890,352 - Shew_3252 0.26 +0.6 3,890,445 - Shew_3252 0.35 +0.4 3,890,874 + Shew_3252 0.75 +0.3 3,890,876 - Shew_3252 0.75 +0.4 3,891,118 - -0.3 3,891,565 + -0.0
Or see this region's nucleotide sequence