Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3195 and Shew_3196 are separated by 432 nucleotides Shew_3196 and Shew_3197 are separated by 141 nucleotides Shew_3197 and Shew_3198 are separated by 183 nucleotides
Shew_3195: Shew_3195 - hypothetical protein (RefSeq), at 3,806,545 to 3,807,150
_3195
Shew_3196: Shew_3196 - D-3-phosphoglycerate dehydrogenase (RefSeq), at 3,807,583 to 3,808,812
_3196
Shew_3197: Shew_3197 - hypothetical protein (RefSeq), at 3,808,954 to 3,809,496
_3197
Shew_3198: Shew_3198 - glycine cleavage T protein (aminomethyl transferase) (RefSeq), at 3,809,680 to 3,810,648
_3198
Position (kb)
3807
3808
3809 Strain fitness (log2 ratio)
-1
0
1 at 3806.654 kb on + strand, within Shew_3195 at 3806.821 kb on + strand, within Shew_3195 at 3807.025 kb on + strand, within Shew_3195 at 3807.212 kb on - strand at 3807.386 kb on - strand at 3807.698 kb on + strand at 3807.967 kb on - strand, within Shew_3196 at 3807.977 kb on - strand, within Shew_3196 at 3808.040 kb on + strand, within Shew_3196 at 3808.089 kb on + strand, within Shew_3196 at 3808.451 kb on + strand, within Shew_3196 at 3808.451 kb on + strand, within Shew_3196 at 3808.459 kb on - strand, within Shew_3196 at 3808.459 kb on - strand, within Shew_3196 at 3808.651 kb on - strand, within Shew_3196 at 3808.775 kb on - strand at 3808.910 kb on - strand at 3809.252 kb on + strand, within Shew_3197 at 3809.279 kb on + strand, within Shew_3197 at 3809.287 kb on - strand, within Shew_3197 at 3809.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 3,806,654 + Shew_3195 0.18 -0.1 3,806,821 + Shew_3195 0.46 -0.6 3,807,025 + Shew_3195 0.79 -0.1 3,807,212 - +0.5 3,807,386 - -0.2 3,807,698 + -1.1 3,807,967 - Shew_3196 0.31 +1.7 3,807,977 - Shew_3196 0.32 +0.2 3,808,040 + Shew_3196 0.37 -0.1 3,808,089 + Shew_3196 0.41 +1.2 3,808,451 + Shew_3196 0.71 +0.5 3,808,451 + Shew_3196 0.71 -0.0 3,808,459 - Shew_3196 0.71 +0.5 3,808,459 - Shew_3196 0.71 +0.4 3,808,651 - Shew_3196 0.87 +0.2 3,808,775 - +0.7 3,808,910 - +0.4 3,809,252 + Shew_3197 0.55 -0.1 3,809,279 + Shew_3197 0.60 -0.1 3,809,287 - Shew_3197 0.61 +1.2 3,809,582 + +0.4
Or see this region's nucleotide sequence