Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3100 and Shew_3101 are separated by 190 nucleotides Shew_3101 and Shew_3102 are separated by 294 nucleotides Shew_3102 and Shew_3103 are separated by 263 nucleotides
Shew_3100: Shew_3100 - UspA domain-containing protein (RefSeq), at 3,681,053 to 3,681,496
_3100
Shew_3101: Shew_3101 - UspA domain-containing protein (RefSeq), at 3,681,687 to 3,682,118
_3101
Shew_3102: Shew_3102 - hypothetical protein (RefSeq), at 3,682,413 to 3,682,790
_3102
Shew_3103: Shew_3103 - aldehyde dehydrogenase (RefSeq), at 3,683,054 to 3,684,478
_3103
Position (kb)
3682
3683 Strain fitness (log2 ratio)
-2
-1
0
1 at 3681.513 kb on - strand at 3681.955 kb on - strand, within Shew_3101 at 3681.985 kb on + strand, within Shew_3101 at 3682.051 kb on + strand, within Shew_3101 at 3682.059 kb on - strand, within Shew_3101 at 3682.059 kb on - strand, within Shew_3101 at 3682.245 kb on - strand at 3682.425 kb on + strand at 3682.512 kb on + strand, within Shew_3102 at 3682.565 kb on + strand, within Shew_3102 at 3682.573 kb on - strand, within Shew_3102 at 3682.573 kb on - strand, within Shew_3102 at 3683.087 kb on + strand at 3683.273 kb on + strand, within Shew_3103 at 3683.376 kb on - strand, within Shew_3103 at 3683.623 kb on - strand, within Shew_3103 at 3683.714 kb on - strand, within Shew_3103 at 3683.714 kb on - strand, within Shew_3103 at 3683.714 kb on - strand, within Shew_3103
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 3,681,513 - +0.3 3,681,955 - Shew_3101 0.62 +0.2 3,681,985 + Shew_3101 0.69 +0.0 3,682,051 + Shew_3101 0.84 +0.1 3,682,059 - Shew_3101 0.86 +0.7 3,682,059 - Shew_3101 0.86 -1.8 3,682,245 - +0.7 3,682,425 + +0.0 3,682,512 + Shew_3102 0.26 +0.8 3,682,565 + Shew_3102 0.40 -0.9 3,682,573 - Shew_3102 0.42 -0.5 3,682,573 - Shew_3102 0.42 +0.1 3,683,087 + +0.2 3,683,273 + Shew_3103 0.15 -0.2 3,683,376 - Shew_3103 0.23 +0.6 3,683,623 - Shew_3103 0.40 +0.5 3,683,714 - Shew_3103 0.46 -0.4 3,683,714 - Shew_3103 0.46 -0.2 3,683,714 - Shew_3103 0.46 -0.2
Or see this region's nucleotide sequence