Strain Fitness in Shewanella loihica PV-4 around Shew_3102

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3100 and Shew_3101 are separated by 190 nucleotidesShew_3101 and Shew_3102 are separated by 294 nucleotidesShew_3102 and Shew_3103 are separated by 263 nucleotides Shew_3100: Shew_3100 - UspA domain-containing protein (RefSeq), at 3,681,053 to 3,681,496 _3100 Shew_3101: Shew_3101 - UspA domain-containing protein (RefSeq), at 3,681,687 to 3,682,118 _3101 Shew_3102: Shew_3102 - hypothetical protein (RefSeq), at 3,682,413 to 3,682,790 _3102 Shew_3103: Shew_3103 - aldehyde dehydrogenase (RefSeq), at 3,683,054 to 3,684,478 _3103 Position (kb) 3682 3683Strain fitness (log2 ratio) -2 -1 0 1at 3681.513 kb on - strandat 3681.955 kb on - strand, within Shew_3101at 3681.985 kb on + strand, within Shew_3101at 3682.051 kb on + strand, within Shew_3101at 3682.059 kb on - strand, within Shew_3101at 3682.059 kb on - strand, within Shew_3101at 3682.245 kb on - strandat 3682.425 kb on + strandat 3682.512 kb on + strand, within Shew_3102at 3682.565 kb on + strand, within Shew_3102at 3682.573 kb on - strand, within Shew_3102at 3682.573 kb on - strand, within Shew_3102at 3683.087 kb on + strandat 3683.273 kb on + strand, within Shew_3103at 3683.376 kb on - strand, within Shew_3103at 3683.623 kb on - strand, within Shew_3103at 3683.714 kb on - strand, within Shew_3103at 3683.714 kb on - strand, within Shew_3103at 3683.714 kb on - strand, within Shew_3103

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,681,513 - +0.3
3,681,955 - Shew_3101 0.62 +0.2
3,681,985 + Shew_3101 0.69 +0.0
3,682,051 + Shew_3101 0.84 +0.1
3,682,059 - Shew_3101 0.86 +0.7
3,682,059 - Shew_3101 0.86 -1.8
3,682,245 - +0.7
3,682,425 + +0.0
3,682,512 + Shew_3102 0.26 +0.8
3,682,565 + Shew_3102 0.40 -0.9
3,682,573 - Shew_3102 0.42 -0.5
3,682,573 - Shew_3102 0.42 +0.1
3,683,087 + +0.2
3,683,273 + Shew_3103 0.15 -0.2
3,683,376 - Shew_3103 0.23 +0.6
3,683,623 - Shew_3103 0.40 +0.5
3,683,714 - Shew_3103 0.46 -0.4
3,683,714 - Shew_3103 0.46 -0.2
3,683,714 - Shew_3103 0.46 -0.2

Or see this region's nucleotide sequence