Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3074 and Shew_3075 are separated by 119 nucleotides Shew_3075 and Shew_3076 are separated by 108 nucleotides Shew_3076 and Shew_3077 are separated by 21 nucleotides
Shew_3074: Shew_3074 - pilin, putative (RefSeq), at 3,648,928 to 3,649,464
_3074
Shew_3075: Shew_3075 - hypothetical protein (RefSeq), at 3,649,584 to 3,649,901
_3075
Shew_3076: Shew_3076 - lysine exporter protein LysE/YggA (RefSeq), at 3,650,010 to 3,650,624
_3076
Shew_3077: Shew_3077 - peptidase S10, serine carboxypeptidase (RefSeq), at 3,650,646 to 3,652,247
_3077
Position (kb)
3650
3651 Strain fitness (log2 ratio)
-2
-1
0
1 at 3649.217 kb on + strand, within Shew_3074 at 3649.332 kb on - strand, within Shew_3074 at 3649.472 kb on - strand at 3649.942 kb on + strand at 3650.100 kb on - strand, within Shew_3076 at 3650.135 kb on + strand, within Shew_3076 at 3650.539 kb on - strand, within Shew_3076 at 3650.555 kb on + strand, within Shew_3076 at 3650.614 kb on + strand at 3650.639 kb on + strand at 3650.682 kb on - strand at 3650.759 kb on - strand at 3650.916 kb on - strand, within Shew_3077 at 3650.933 kb on + strand, within Shew_3077 at 3651.100 kb on - strand, within Shew_3077 at 3651.265 kb on + strand, within Shew_3077 at 3651.265 kb on + strand, within Shew_3077 at 3651.265 kb on + strand, within Shew_3077 at 3651.265 kb on + strand, within Shew_3077 at 3651.273 kb on - strand, within Shew_3077 at 3651.273 kb on - strand, within Shew_3077 at 3651.624 kb on + strand, within Shew_3077
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 3,649,217 + Shew_3074 0.54 -0.1 3,649,332 - Shew_3074 0.75 +0.3 3,649,472 - -0.1 3,649,942 + +0.2 3,650,100 - Shew_3076 0.15 -0.4 3,650,135 + Shew_3076 0.20 -0.2 3,650,539 - Shew_3076 0.86 +0.4 3,650,555 + Shew_3076 0.89 -0.2 3,650,614 + +0.2 3,650,639 + +0.2 3,650,682 - -1.9 3,650,759 - +0.3 3,650,916 - Shew_3077 0.17 +0.3 3,650,933 + Shew_3077 0.18 +0.2 3,651,100 - Shew_3077 0.28 -1.1 3,651,265 + Shew_3077 0.39 -0.4 3,651,265 + Shew_3077 0.39 +0.3 3,651,265 + Shew_3077 0.39 +0.3 3,651,265 + Shew_3077 0.39 +0.6 3,651,273 - Shew_3077 0.39 +0.1 3,651,273 - Shew_3077 0.39 +0.2 3,651,624 + Shew_3077 0.61 +0.3
Or see this region's nucleotide sequence