Strain Fitness in Shewanella loihica PV-4 around Shew_3042

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3041 and Shew_3042 are separated by 78 nucleotidesShew_3042 and Shew_3043 are separated by 190 nucleotidesShew_3043 and Shew_3044 are separated by 307 nucleotides Shew_3041: Shew_3041 - hypothetical protein (RefSeq), at 3,613,158 to 3,614,087 _3041 Shew_3042: Shew_3042 - hypothetical protein (RefSeq), at 3,614,166 to 3,614,552 _3042 Shew_3043: Shew_3043 - hypothetical protein (RefSeq), at 3,614,743 to 3,614,991 _3043 Shew_3044: Shew_3044 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,615,299 to 3,617,365 _3044 Position (kb) 3614 3615Strain fitness (log2 ratio) -1 0 1at 3613.328 kb on + strand, within Shew_3041at 3613.501 kb on + strand, within Shew_3041at 3613.565 kb on - strand, within Shew_3041at 3613.821 kb on + strand, within Shew_3041at 3613.829 kb on - strand, within Shew_3041at 3613.873 kb on - strand, within Shew_3041at 3614.031 kb on - strandat 3614.234 kb on + strand, within Shew_3042at 3614.367 kb on - strand, within Shew_3042at 3614.369 kb on + strand, within Shew_3042at 3614.381 kb on + strand, within Shew_3042at 3614.381 kb on + strand, within Shew_3042at 3614.650 kb on - strandat 3615.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,613,328 + Shew_3041 0.18 -0.6
3,613,501 + Shew_3041 0.37 -0.2
3,613,565 - Shew_3041 0.44 +0.7
3,613,821 + Shew_3041 0.71 +0.4
3,613,829 - Shew_3041 0.72 +0.2
3,613,873 - Shew_3041 0.77 -0.5
3,614,031 - +0.7
3,614,234 + Shew_3042 0.18 +0.9
3,614,367 - Shew_3042 0.52 +0.2
3,614,369 + Shew_3042 0.52 +0.4
3,614,381 + Shew_3042 0.56 +0.1
3,614,381 + Shew_3042 0.56 +0.2
3,614,650 - -0.1
3,615,379 + +0.1

Or see this region's nucleotide sequence