Strain Fitness in Shewanella loihica PV-4 around Shew_2965
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,516,580 | - | Shew_2964 | 0.15 | -0.2 | |
3,516,604 | + | Shew_2964 | 0.18 | -0.0 | |
3,516,635 | - | Shew_2964 | 0.20 | +0.3 | |
3,516,766 | - | Shew_2964 | 0.32 | +0.7 | |
3,517,115 | - | Shew_2964 | 0.62 | +0.3 | |
3,517,425 | - | Shew_2964 | 0.89 | +0.2 | |
3,517,839 | - | Shew_2965 | 0.21 | +0.1 | |
3,517,882 | + | Shew_2965 | 0.25 | +1.2 | |
3,517,882 | + | Shew_2965 | 0.25 | +0.8 | |
3,517,888 | + | Shew_2965 | 0.25 | -0.1 | |
3,517,888 | + | Shew_2965 | 0.25 | +0.1 | |
3,517,896 | - | Shew_2965 | 0.26 | +0.3 | |
3,517,959 | - | Shew_2965 | 0.31 | -0.1 | |
3,517,997 | - | Shew_2965 | 0.34 | +0.4 | |
3,518,039 | + | Shew_2965 | 0.37 | +0.4 | |
3,518,179 | + | Shew_2965 | 0.48 | +0.3 | |
3,518,218 | + | Shew_2965 | 0.51 | +0.4 | |
3,518,516 | - | Shew_2965 | 0.75 | +0.5 | |
3,518,537 | - | Shew_2965 | 0.76 | +0.4 | |
3,518,591 | + | Shew_2965 | 0.81 | +0.2 | |
3,519,064 | - | Shew_2966 | 0.20 | -0.3 | |
3,519,707 | + | +1.5 | |||
3,519,774 | + | -0.1 |
Or see this region's nucleotide sequence