Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2921 and Shew_2922 are separated by 198 nucleotides Shew_2922 and Shew_2923 are separated by 98 nucleotides Shew_2923 and Shew_2924 are separated by 241 nucleotides
Shew_2921: Shew_2921 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq), at 3,459,650 to 3,460,843
_2921
Shew_2922: Shew_2922 - hypothetical protein (RefSeq), at 3,461,042 to 3,461,344
_2922
Shew_2923: Shew_2923 - tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq), at 3,461,443 to 3,462,867
_2923
Shew_2924: Shew_2924 - PhoH family protein (RefSeq), at 3,463,109 to 3,464,152
_2924
Position (kb)
3461
3462
3463 Strain fitness (log2 ratio)
-1
0
1
2 at 3460.829 kb on - strand at 3461.144 kb on - strand, within Shew_2922 at 3461.205 kb on + strand, within Shew_2922 at 3461.236 kb on + strand, within Shew_2922 at 3461.498 kb on + strand at 3461.660 kb on + strand, within Shew_2923 at 3461.948 kb on - strand, within Shew_2923 at 3461.954 kb on + strand, within Shew_2923 at 3462.023 kb on - strand, within Shew_2923 at 3462.253 kb on + strand, within Shew_2923 at 3462.454 kb on - strand, within Shew_2923
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 3,460,829 - -0.8 3,461,144 - Shew_2922 0.34 +0.3 3,461,205 + Shew_2922 0.54 +2.0 3,461,236 + Shew_2922 0.64 +0.2 3,461,498 + +1.4 3,461,660 + Shew_2923 0.15 +1.8 3,461,948 - Shew_2923 0.35 +1.6 3,461,954 + Shew_2923 0.36 +1.5 3,462,023 - Shew_2923 0.41 +1.0 3,462,253 + Shew_2923 0.57 +1.5 3,462,454 - Shew_2923 0.71 -0.1
Or see this region's nucleotide sequence