Strain Fitness in Shewanella loihica PV-4 around Shew_2821
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,342,248 | + | prfC | Shew_2820 | 0.78 | +0.3 |
3,342,796 | + | +0.1 | |||
3,342,796 | + | +0.3 | |||
3,343,221 | - | Shew_2821 | 0.47 | -4.9 | |
3,343,300 | - | Shew_2821 | 0.56 | -3.5 | |
3,343,487 | + | Shew_2821 | 0.77 | -6.2 | |
3,343,487 | + | Shew_2821 | 0.77 | -3.1 | |
3,343,495 | - | Shew_2821 | 0.78 | +0.8 | |
3,343,573 | + | Shew_2821 | 0.87 | -2.7 |
Or see this region's nucleotide sequence