Strain Fitness in Shewanella loihica PV-4 around Shew_2821

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprfC and Shew_2821 are separated by 195 nucleotidesShew_2821 and Shew_2822 are separated by 137 nucleotides Shew_2820: prfC - peptide chain release factor 3 (RefSeq), at 3,341,022 to 3,342,602 prfC Shew_2821: Shew_2821 - lipoprotein NlpI (RefSeq), at 3,342,798 to 3,343,688 _2821 Shew_2822: Shew_2822 - polynucleotide phosphorylase/polyadenylase (RefSeq), at 3,343,826 to 3,345,928 _2822 Position (kb) 3342 3343 3344Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3342.248 kb on + strand, within prfCat 3342.796 kb on + strandat 3342.796 kb on + strandat 3343.221 kb on - strand, within Shew_2821at 3343.300 kb on - strand, within Shew_2821at 3343.487 kb on + strand, within Shew_2821at 3343.487 kb on + strand, within Shew_2821at 3343.495 kb on - strand, within Shew_2821at 3343.573 kb on + strand, within Shew_2821

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,342,248 + prfC Shew_2820 0.78 +0.3
3,342,796 + +0.1
3,342,796 + +0.3
3,343,221 - Shew_2821 0.47 -4.9
3,343,300 - Shew_2821 0.56 -3.5
3,343,487 + Shew_2821 0.77 -6.2
3,343,487 + Shew_2821 0.77 -3.1
3,343,495 - Shew_2821 0.78 +0.8
3,343,573 + Shew_2821 0.87 -2.7

Or see this region's nucleotide sequence