Strain Fitness in Shewanella loihica PV-4 around Shew_2783

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2782 and Shew_2783 are separated by 288 nucleotidesShew_2783 and Shew_2784 are separated by 511 nucleotides Shew_2782: Shew_2782 - putative signal transduction protein (RefSeq), at 3,291,026 to 3,291,868 _2782 Shew_2783: Shew_2783 - peptidase U32 (RefSeq), at 3,292,157 to 3,293,518 _2783 Shew_2784: Shew_2784 - phosphoesterase, PA-phosphatase related (RefSeq), at 3,294,030 to 3,295,358 _2784 Position (kb) 3292 3293 3294Strain fitness (log2 ratio) -1 0 1at 3291.364 kb on + strand, within Shew_2782at 3291.563 kb on - strand, within Shew_2782at 3291.736 kb on + strand, within Shew_2782at 3291.935 kb on - strandat 3291.996 kb on - strandat 3292.018 kb on + strandat 3292.265 kb on - strandat 3292.359 kb on + strand, within Shew_2783at 3292.359 kb on + strand, within Shew_2783at 3292.407 kb on + strand, within Shew_2783at 3292.446 kb on - strand, within Shew_2783at 3292.508 kb on + strand, within Shew_2783at 3292.516 kb on - strand, within Shew_2783at 3292.521 kb on - strand, within Shew_2783at 3292.624 kb on - strand, within Shew_2783at 3292.666 kb on + strand, within Shew_2783at 3292.674 kb on - strand, within Shew_2783at 3292.833 kb on + strand, within Shew_2783at 3292.833 kb on + strand, within Shew_2783at 3292.841 kb on - strand, within Shew_2783at 3293.354 kb on - strand, within Shew_2783at 3293.619 kb on + strandat 3294.067 kb on + strandat 3294.276 kb on + strand, within Shew_2784at 3294.284 kb on - strand, within Shew_2784at 3294.320 kb on + strand, within Shew_2784

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,291,364 + Shew_2782 0.40 +0.5
3,291,563 - Shew_2782 0.64 +0.2
3,291,736 + Shew_2782 0.84 -0.1
3,291,935 - +0.2
3,291,996 - -0.5
3,292,018 + -0.5
3,292,265 - +1.0
3,292,359 + Shew_2783 0.15 +0.4
3,292,359 + Shew_2783 0.15 +1.3
3,292,407 + Shew_2783 0.18 +1.4
3,292,446 - Shew_2783 0.21 +1.0
3,292,508 + Shew_2783 0.26 +0.4
3,292,516 - Shew_2783 0.26 +1.5
3,292,521 - Shew_2783 0.27 +1.3
3,292,624 - Shew_2783 0.34 -0.0
3,292,666 + Shew_2783 0.37 +0.7
3,292,674 - Shew_2783 0.38 +1.0
3,292,833 + Shew_2783 0.50 +0.9
3,292,833 + Shew_2783 0.50 +0.5
3,292,841 - Shew_2783 0.50 +0.4
3,293,354 - Shew_2783 0.88 +0.3
3,293,619 + +0.2
3,294,067 + +0.4
3,294,276 + Shew_2784 0.19 +0.3
3,294,284 - Shew_2784 0.19 +0.1
3,294,320 + Shew_2784 0.22 +0.4

Or see this region's nucleotide sequence