Strain Fitness in Shewanella loihica PV-4 around Shew_2780

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2779 and Shew_2780 are separated by 86 nucleotidesShew_2780 and Shew_2781 are separated by 23 nucleotides Shew_2779: Shew_2779 - amino acid ABC transporter (RefSeq), at 3,288,098 to 3,288,907 _2779 Shew_2780: Shew_2780 - thioesterase superfamily protein (RefSeq), at 3,288,994 to 3,289,434 _2780 Shew_2781: Shew_2781 - diguanylate cyclase/phosphodiesterase (RefSeq), at 3,289,458 to 3,290,954 _2781 Position (kb) 3288 3289 3290Strain fitness (log2 ratio) -2 -1 0 1 2at 3288.391 kb on + strand, within Shew_2779at 3288.783 kb on + strand, within Shew_2779at 3288.791 kb on - strand, within Shew_2779at 3288.882 kb on + strandat 3288.890 kb on - strandat 3288.890 kb on - strandat 3289.075 kb on + strand, within Shew_2780at 3289.603 kb on - strandat 3289.801 kb on + strand, within Shew_2781at 3290.032 kb on - strand, within Shew_2781at 3290.099 kb on + strand, within Shew_2781at 3290.107 kb on - strand, within Shew_2781at 3290.410 kb on + strand, within Shew_2781

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,288,391 + Shew_2779 0.36 -0.4
3,288,783 + Shew_2779 0.85 -2.4
3,288,791 - Shew_2779 0.86 +0.2
3,288,882 + -0.1
3,288,890 - -0.0
3,288,890 - +0.4
3,289,075 + Shew_2780 0.18 +1.8
3,289,603 - -0.2
3,289,801 + Shew_2781 0.23 -0.2
3,290,032 - Shew_2781 0.38 +0.7
3,290,099 + Shew_2781 0.43 +0.3
3,290,107 - Shew_2781 0.43 -0.3
3,290,410 + Shew_2781 0.64 +0.4

Or see this region's nucleotide sequence