Strain Fitness in Shewanella loihica PV-4 around Shew_2774

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2773 and Shew_2774 are separated by 45 nucleotidesShew_2774 and Shew_2775 are separated by 229 nucleotides Shew_2773: Shew_2773 - NAD(+) kinase (RefSeq), at 3,278,438 to 3,279,316 _2773 Shew_2774: Shew_2774 - TonB family protein (RefSeq), at 3,279,362 to 3,280,426 _2774 Shew_2775: Shew_2775 - MATE efflux family protein (RefSeq), at 3,280,656 to 3,282,026 _2775 Position (kb) 3279 3280 3281Strain fitness (log2 ratio) -1 0 1at 3279.318 kb on - strandat 3279.529 kb on - strand, within Shew_2774at 3279.852 kb on + strand, within Shew_2774at 3280.078 kb on - strand, within Shew_2774at 3280.111 kb on - strand, within Shew_2774at 3280.542 kb on - strandat 3281.064 kb on - strand, within Shew_2775

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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3,279,318 - +0.8
3,279,529 - Shew_2774 0.16 -0.1
3,279,852 + Shew_2774 0.46 +0.4
3,280,078 - Shew_2774 0.67 +0.6
3,280,111 - Shew_2774 0.70 -0.3
3,280,542 - +0.4
3,281,064 - Shew_2775 0.30 +0.2

Or see this region's nucleotide sequence