Strain Fitness in Shewanella loihica PV-4 around Shew_2759
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,261,624 | - | Shew_2757 | 0.47 | -0.4 | |
3,261,675 | + | Shew_2757 | 0.60 | +0.2 | |
3,261,675 | + | Shew_2757 | 0.60 | +0.1 | |
3,261,836 | + | +0.2 | |||
3,261,852 | + | +0.1 | |||
3,261,860 | - | -0.1 | |||
3,261,864 | + | +0.3 | |||
3,262,491 | + | -0.7 | |||
3,262,558 | + | -0.8 | |||
3,262,953 | + | Shew_2759 | 0.18 | -1.1 | |
3,263,063 | - | Shew_2759 | 0.22 | -1.0 | |
3,263,205 | - | Shew_2759 | 0.27 | -1.8 | |
3,263,294 | - | Shew_2759 | 0.30 | -0.8 | |
3,263,358 | - | Shew_2759 | 0.32 | -1.0 | |
3,263,449 | - | Shew_2759 | 0.35 | -1.3 | |
3,263,466 | + | Shew_2759 | 0.36 | -0.9 | |
3,263,544 | - | Shew_2759 | 0.39 | -2.2 | |
3,263,576 | - | Shew_2759 | 0.40 | -0.2 | |
3,263,586 | - | Shew_2759 | 0.40 | -1.2 | |
3,263,679 | + | Shew_2759 | 0.43 | -0.7 | |
3,263,679 | + | Shew_2759 | 0.43 | -1.9 | |
3,263,867 | - | Shew_2759 | 0.50 | -1.5 | |
3,264,028 | - | Shew_2759 | 0.56 | -1.2 | |
3,264,236 | - | Shew_2759 | 0.63 | -0.5 | |
3,264,580 | - | Shew_2759 | 0.75 | -0.5 | |
3,264,700 | + | Shew_2759 | 0.80 | +0.1 | |
3,264,842 | + | Shew_2759 | 0.85 | -1.4 | |
3,265,107 | - | -0.4 | |||
3,265,108 | + | -0.2 |
Or see this region's nucleotide sequence