Strain Fitness in Shewanella loihica PV-4 around Shew_2521

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2520 and Shew_2521 are separated by 28 nucleotidesShew_2521 and Shew_2522 are separated by 60 nucleotides Shew_2520: Shew_2520 - outer membrane protein, putative (RefSeq), at 2,965,223 to 2,967,334 _2520 Shew_2521: Shew_2521 - decaheme cytochrome c MtrF (RefSeq), at 2,967,363 to 2,969,282 _2521 Shew_2522: Shew_2522 - decaheme cytochrome c (RefSeq), at 2,969,343 to 2,971,505 _2522 Position (kb) 2967 2968 2969 2970Strain fitness (log2 ratio) -1 0 1at 2966.793 kb on - strand, within Shew_2520at 2966.817 kb on + strand, within Shew_2520at 2966.819 kb on - strand, within Shew_2520at 2967.179 kb on - strandat 2967.511 kb on + strandat 2967.635 kb on + strand, within Shew_2521at 2967.703 kb on + strand, within Shew_2521at 2967.711 kb on - strand, within Shew_2521at 2967.759 kb on + strand, within Shew_2521at 2967.767 kb on - strand, within Shew_2521at 2967.791 kb on + strand, within Shew_2521at 2967.862 kb on + strand, within Shew_2521at 2968.201 kb on + strand, within Shew_2521at 2968.337 kb on + strand, within Shew_2521at 2968.372 kb on + strand, within Shew_2521at 2968.421 kb on + strand, within Shew_2521at 2968.421 kb on + strand, within Shew_2521at 2968.421 kb on + strand, within Shew_2521at 2968.429 kb on - strand, within Shew_2521at 2968.429 kb on - strand, within Shew_2521at 2968.520 kb on + strand, within Shew_2521at 2969.009 kb on + strand, within Shew_2521at 2969.009 kb on + strand, within Shew_2521at 2969.241 kb on + strandat 2969.755 kb on - strand, within Shew_2522at 2970.052 kb on + strand, within Shew_2522at 2970.060 kb on - strand, within Shew_2522at 2970.090 kb on - strand, within Shew_2522at 2970.180 kb on + strand, within Shew_2522at 2970.188 kb on - strand, within Shew_2522at 2970.193 kb on - strand, within Shew_2522

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,966,793 - Shew_2520 0.74 +0.0
2,966,817 + Shew_2520 0.75 +0.4
2,966,819 - Shew_2520 0.76 -1.3
2,967,179 - +0.1
2,967,511 + +0.1
2,967,635 + Shew_2521 0.14 -0.3
2,967,703 + Shew_2521 0.18 +0.6
2,967,711 - Shew_2521 0.18 +1.0
2,967,759 + Shew_2521 0.21 +0.9
2,967,767 - Shew_2521 0.21 +0.4
2,967,791 + Shew_2521 0.22 -0.3
2,967,862 + Shew_2521 0.26 -0.4
2,968,201 + Shew_2521 0.44 -0.0
2,968,337 + Shew_2521 0.51 -0.8
2,968,372 + Shew_2521 0.53 +1.1
2,968,421 + Shew_2521 0.55 +0.9
2,968,421 + Shew_2521 0.55 +0.2
2,968,421 + Shew_2521 0.55 -0.4
2,968,429 - Shew_2521 0.56 +0.3
2,968,429 - Shew_2521 0.56 +0.8
2,968,520 + Shew_2521 0.60 +0.1
2,969,009 + Shew_2521 0.86 +0.0
2,969,009 + Shew_2521 0.86 +0.5
2,969,241 + +0.2
2,969,755 - Shew_2522 0.19 -1.6
2,970,052 + Shew_2522 0.33 -0.3
2,970,060 - Shew_2522 0.33 -0.3
2,970,090 - Shew_2522 0.35 -0.1
2,970,180 + Shew_2522 0.39 +0.1
2,970,188 - Shew_2522 0.39 +0.7
2,970,193 - Shew_2522 0.39 -0.1

Or see this region's nucleotide sequence