Strain Fitness in Shewanella loihica PV-4 around Shew_2517

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2516 and Shew_2517 are separated by 205 nucleotidesShew_2517 and Shew_2518 overlap by 8 nucleotidesShew_2518 and Shew_2519 are separated by 393 nucleotides Shew_2516: Shew_2516 - glutaminyl-tRNA synthetase (RefSeq), at 2,959,443 to 2,961,113 _2516 Shew_2517: Shew_2517 - ferrous iron transport protein B (RefSeq), at 2,961,319 to 2,963,613 _2517 Shew_2518: Shew_2518 - FeoA family protein (RefSeq), at 2,963,606 to 2,963,845 _2518 Shew_2519: Shew_2519 - cytochrome C family protein (RefSeq), at 2,964,239 to 2,965,207 _2519 Position (kb) 2961 2962 2963 2964Strain fitness (log2 ratio) -2 -1 0 1at 2961.299 kb on + strandat 2964.403 kb on - strand, within Shew_2519

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,961,299 + -2.5
2,964,403 - Shew_2519 0.17 -0.7

Or see this region's nucleotide sequence