Strain Fitness in Shewanella loihica PV-4 around Shew_2505

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2504 and Shew_2505 are separated by 225 nucleotidesShew_2505 and Shew_2506 are separated by 259 nucleotides Shew_2504: Shew_2504 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 2,944,391 to 2,946,256 _2504 Shew_2505: Shew_2505 - histone family protein DNA-binding protein (RefSeq), at 2,946,482 to 2,946,754 _2505 Shew_2506: Shew_2506 - ATP-dependent protease La (RefSeq), at 2,947,014 to 2,949,371 _2506 Position (kb) 2946 2947Strain fitness (log2 ratio) -3 -2 -1 0 1at 2946.346 kb on - strandat 2946.346 kb on - strandat 2946.436 kb on - strandat 2946.747 kb on - strandat 2946.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,946,346 - -3.1
2,946,346 - -0.8
2,946,436 - -1.7
2,946,747 - -1.3
2,946,747 - -1.6

Or see this region's nucleotide sequence