Strain Fitness in Shewanella loihica PV-4 around Shew_2466

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2465 and Shew_2466 are separated by 3 nucleotidesShew_2466 and Shew_2467 are separated by 125 nucleotidesShew_2467 and Shew_2468 are separated by 32 nucleotidesShew_2468 and Shew_2469 are separated by 48 nucleotides Shew_2465: Shew_2465 - LysR family transcriptional regulator (RefSeq), at 2,901,238 to 2,902,167 _2465 Shew_2466: Shew_2466 - hypothetical protein (RefSeq), at 2,902,171 to 2,904,141 _2466 Shew_2467: Shew_2467 - hypothetical protein (RefSeq), at 2,904,267 to 2,904,653 _2467 Shew_2468: Shew_2468 - RNA-binding S4 domain-containing protein (RefSeq), at 2,904,686 to 2,904,916 _2468 Shew_2469: Shew_2469 - GCN5-related N-acetyltransferase (RefSeq), at 2,904,965 to 2,905,513 _2469 Position (kb) 2902 2903 2904 2905Strain fitness (log2 ratio) -1 0 1at 2902.248 kb on - strandat 2902.256 kb on - strandat 2902.353 kb on + strandat 2902.393 kb on + strand, within Shew_2466at 2902.476 kb on - strand, within Shew_2466at 2902.507 kb on - strand, within Shew_2466at 2902.627 kb on + strand, within Shew_2466at 2902.762 kb on + strand, within Shew_2466at 2902.789 kb on - strand, within Shew_2466at 2902.841 kb on + strand, within Shew_2466at 2903.306 kb on - strand, within Shew_2466at 2903.526 kb on + strand, within Shew_2466at 2903.526 kb on + strand, within Shew_2466at 2903.950 kb on - strandat 2904.157 kb on - strandat 2905.140 kb on + strand, within Shew_2469

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,902,248 - +0.2
2,902,256 - +0.1
2,902,353 + +1.2
2,902,393 + Shew_2466 0.11 +0.4
2,902,476 - Shew_2466 0.15 +0.1
2,902,507 - Shew_2466 0.17 +0.7
2,902,627 + Shew_2466 0.23 +0.8
2,902,762 + Shew_2466 0.30 +0.9
2,902,789 - Shew_2466 0.31 +1.2
2,902,841 + Shew_2466 0.34 +0.6
2,903,306 - Shew_2466 0.58 +0.4
2,903,526 + Shew_2466 0.69 +0.9
2,903,526 + Shew_2466 0.69 +0.5
2,903,950 - +0.6
2,904,157 - +0.3
2,905,140 + Shew_2469 0.32 -1.6

Or see this region's nucleotide sequence