Strain Fitness in Shewanella loihica PV-4 around Shew_2431

Experiment: Thallium(I) acetate 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2430 and Shew_2431 overlap by 4 nucleotidesShew_2431 and Shew_2432 overlap by 7 nucleotides Shew_2430: Shew_2430 - von Willebrand factor, type A (RefSeq), at 2,855,541 to 2,856,560 _2430 Shew_2431: Shew_2431 - TPR repeat-containing protein (RefSeq), at 2,856,557 to 2,858,638 _2431 Shew_2432: Shew_2432 - hypothetical protein (RefSeq), at 2,858,632 to 2,860,272 _2432 Position (kb) 2856 2857 2858 2859Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2855.805 kb on + strand, within Shew_2430at 2856.167 kb on + strand, within Shew_2430at 2856.231 kb on - strand, within Shew_2430at 2856.231 kb on - strand, within Shew_2430at 2856.906 kb on - strand, within Shew_2431at 2856.944 kb on + strand, within Shew_2431at 2857.047 kb on - strand, within Shew_2431at 2857.114 kb on + strand, within Shew_2431at 2857.826 kb on - strand, within Shew_2431at 2857.958 kb on + strand, within Shew_2431at 2859.083 kb on - strand, within Shew_2432at 2859.233 kb on + strand, within Shew_2432at 2859.233 kb on + strand, within Shew_2432at 2859.350 kb on + strand, within Shew_2432at 2859.360 kb on + strand, within Shew_2432at 2859.368 kb on - strand, within Shew_2432

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
remove
2,855,805 + Shew_2430 0.26 -4.5
2,856,167 + Shew_2430 0.61 -3.4
2,856,231 - Shew_2430 0.68 -2.8
2,856,231 - Shew_2430 0.68 -4.1
2,856,906 - Shew_2431 0.17 -3.7
2,856,944 + Shew_2431 0.19 -3.1
2,857,047 - Shew_2431 0.24 -3.3
2,857,114 + Shew_2431 0.27 -2.7
2,857,826 - Shew_2431 0.61 -3.1
2,857,958 + Shew_2431 0.67 -3.6
2,859,083 - Shew_2432 0.27 -1.6
2,859,233 + Shew_2432 0.37 -2.6
2,859,233 + Shew_2432 0.37 -3.3
2,859,350 + Shew_2432 0.44 -2.5
2,859,360 + Shew_2432 0.44 -4.6
2,859,368 - Shew_2432 0.45 -2.3

Or see this region's nucleotide sequence