Strain Fitness in Shewanella loihica PV-4 around Shew_2425
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,848,360 | - | Shew_2422 | 0.73 | +0.2 | |
2,848,621 | - | Shew_2423 | 0.58 | +0.8 | |
2,848,819 | - | +0.1 | |||
2,848,855 | + | -0.2 | |||
2,848,954 | - | -0.7 | |||
2,850,004 | - | fadJ | Shew_2425 | 0.32 | -1.6 |
2,850,300 | + | fadJ | Shew_2425 | 0.46 | -1.7 |
2,850,402 | - | fadJ | Shew_2425 | 0.51 | -0.8 |
2,850,414 | - | fadJ | Shew_2425 | 0.51 | -0.2 |
2,850,495 | - | fadJ | Shew_2425 | 0.55 | -1.9 |
2,850,597 | - | fadJ | Shew_2425 | 0.60 | -0.6 |
2,850,790 | - | fadJ | Shew_2425 | 0.69 | -1.7 |
2,851,278 | - | +0.1 | |||
2,851,587 | - | fadI | Shew_2426 | 0.10 | -0.9 |
2,851,723 | - | fadI | Shew_2426 | 0.21 | -0.3 |
2,851,982 | + | fadI | Shew_2426 | 0.40 | -0.3 |
Or see this region's nucleotide sequence