Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2422 and Shew_2423 are separated by 18 nucleotides Shew_2423 and Shew_2424 are separated by 293 nucleotides Shew_2424 and fadJ are separated by 158 nucleotides fadJ and fadI are separated by 4 nucleotides
Shew_2422: Shew_2422 - hypothetical protein (RefSeq), at 2,847,897 to 2,848,532
_2422
Shew_2423: Shew_2423 - hypothetical protein (RefSeq), at 2,848,551 to 2,848,670
_2423
Shew_2424: Shew_2424 - hypothetical protein (RefSeq), at 2,848,964 to 2,849,170
_2424
Shew_2425: fadJ - multifunctional fatty acid oxidation complex subunit alpha (RefSeq), at 2,849,329 to 2,851,449
fadJ
Shew_2426: fadI - 3-ketoacyl-CoA thiolase (RefSeq), at 2,851,454 to 2,852,764
fadI
Position (kb)
2849
2850
2851
2852 Strain fitness (log2 ratio)
-2
-1
0
1 at 2848.360 kb on - strand, within Shew_2422 at 2848.621 kb on - strand, within Shew_2423 at 2848.819 kb on - strand at 2848.855 kb on + strand at 2848.954 kb on - strand at 2850.004 kb on - strand, within fadJ at 2850.300 kb on + strand, within fadJ at 2850.402 kb on - strand, within fadJ at 2850.414 kb on - strand, within fadJ at 2850.495 kb on - strand, within fadJ at 2850.597 kb on - strand, within fadJ at 2850.790 kb on - strand, within fadJ at 2851.278 kb on - strand at 2851.587 kb on - strand, within fadI at 2851.723 kb on - strand, within fadI at 2851.982 kb on + strand, within fadI
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 2,848,360 - Shew_2422 0.73 +0.2 2,848,621 - Shew_2423 0.58 +0.8 2,848,819 - +0.1 2,848,855 + -0.2 2,848,954 - -0.7 2,850,004 - fadJ Shew_2425 0.32 -1.6 2,850,300 + fadJ Shew_2425 0.46 -1.7 2,850,402 - fadJ Shew_2425 0.51 -0.8 2,850,414 - fadJ Shew_2425 0.51 -0.2 2,850,495 - fadJ Shew_2425 0.55 -1.9 2,850,597 - fadJ Shew_2425 0.60 -0.6 2,850,790 - fadJ Shew_2425 0.69 -1.7 2,851,278 - +0.1 2,851,587 - fadI Shew_2426 0.10 -0.9 2,851,723 - fadI Shew_2426 0.21 -0.3 2,851,982 + fadI Shew_2426 0.40 -0.3
Or see this region's nucleotide sequence