Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2410 and Shew_2411 are separated by 103 nucleotides Shew_2411 and Shew_2412 are separated by 82 nucleotides Shew_2412 and Shew_2413 are separated by 2 nucleotides Shew_2413 and Shew_2414 are separated by 22 nucleotides
Shew_2410: Shew_2410 - beta-ketoacyl synthase (RefSeq), at 2,829,576 to 2,830,787
_2410
Shew_2411: Shew_2411 - FAD dependent oxidoreductase (RefSeq), at 2,830,891 to 2,832,951
_2411
Shew_2412: Shew_2412 - tRNA/rRNA methyltransferase (SpoU) (RefSeq), at 2,833,034 to 2,833,558
_2412
Shew_2413: Shew_2413 - hypothetical protein (RefSeq), at 2,833,561 to 2,833,842
_2413
Shew_2414: Shew_2414 - ATP-NAD/AcoX kinase (RefSeq), at 2,833,865 to 2,835,031
_2414
Position (kb)
2830
2831
2832
2833 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2830.534 kb on - strand, within Shew_2410 at 2831.475 kb on + strand, within Shew_2411 at 2831.855 kb on + strand, within Shew_2411 at 2831.863 kb on - strand, within Shew_2411 at 2831.928 kb on + strand, within Shew_2411 at 2832.119 kb on - strand, within Shew_2411 at 2832.148 kb on + strand, within Shew_2411 at 2832.815 kb on + strand at 2833.395 kb on + strand, within Shew_2412 at 2833.418 kb on - strand, within Shew_2412 at 2833.802 kb on - strand, within Shew_2413 at 2833.885 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 2,830,534 - Shew_2410 0.79 -3.1 2,831,475 + Shew_2411 0.28 +0.5 2,831,855 + Shew_2411 0.47 -0.7 2,831,863 - Shew_2411 0.47 +0.1 2,831,928 + Shew_2411 0.50 +0.3 2,832,119 - Shew_2411 0.60 -0.5 2,832,148 + Shew_2411 0.61 -1.3 2,832,815 + -0.2 2,833,395 + Shew_2412 0.69 +0.2 2,833,418 - Shew_2412 0.73 -2.9 2,833,802 - Shew_2413 0.85 -0.3 2,833,885 + -1.2
Or see this region's nucleotide sequence