Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2357 and Shew_2358 are separated by 173 nucleotides Shew_2358 and Shew_2359 are separated by 69 nucleotides Shew_2359 and Shew_2360 are separated by 161 nucleotides
Shew_2357: Shew_2357 - D,D-heptose 1,7-bisphosphate phosphatase (RefSeq), at 2,757,544 to 2,758,098
_2357
Shew_2358: Shew_2358 - peptidase M24 (RefSeq), at 2,758,272 to 2,759,591
_2358
Shew_2359: Shew_2359 - uracil-DNA glycosylase superfamily protein (RefSeq), at 2,759,661 to 2,760,251
_2359
Shew_2360: Shew_2360 - D-hydroxyproline dehydrogenase (from data) , at 2,760,413 to 2,761,753
_2360
Position (kb)
2758
2759
2760 Strain fitness (log2 ratio)
-1
0
1 at 2757.361 kb on + strand at 2757.491 kb on + strand at 2757.491 kb on + strand at 2757.719 kb on - strand, within Shew_2357 at 2757.721 kb on + strand, within Shew_2357 at 2758.267 kb on - strand at 2758.457 kb on + strand, within Shew_2358 at 2758.465 kb on - strand, within Shew_2358 at 2758.705 kb on - strand, within Shew_2358 at 2758.830 kb on + strand, within Shew_2358 at 2759.026 kb on - strand, within Shew_2358 at 2759.128 kb on - strand, within Shew_2358 at 2759.177 kb on + strand, within Shew_2358 at 2759.728 kb on + strand, within Shew_2359 at 2760.280 kb on + strand at 2760.582 kb on + strand, within Shew_2360
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 2,757,361 + -0.4 2,757,491 + +0.1 2,757,491 + -0.7 2,757,719 - Shew_2357 0.32 -0.3 2,757,721 + Shew_2357 0.32 -0.6 2,758,267 - -0.5 2,758,457 + Shew_2358 0.14 +0.4 2,758,465 - Shew_2358 0.15 -0.3 2,758,705 - Shew_2358 0.33 +0.4 2,758,830 + Shew_2358 0.42 +1.1 2,759,026 - Shew_2358 0.57 +0.8 2,759,128 - Shew_2358 0.65 +0.7 2,759,177 + Shew_2358 0.69 +0.3 2,759,728 + Shew_2359 0.11 -0.3 2,760,280 + -0.8 2,760,582 + Shew_2360 0.13 +0.9
Or see this region's nucleotide sequence