Strain Fitness in Shewanella loihica PV-4 around Shew_2308

Experiment: Thallium(I) acetate 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2307 and Shew_2308 are separated by 200 nucleotidesShew_2308 and Shew_2309 are separated by 2 nucleotides Shew_2307: Shew_2307 - hypothetical protein (RefSeq), at 2,702,822 to 2,705,509 _2307 Shew_2308: Shew_2308 - aspartate-semialdehyde dehydrogenase (RefSeq), at 2,705,710 to 2,706,726 _2308 Shew_2309: Shew_2309 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 2,706,729 to 2,707,859 _2309 Position (kb) 2705 2706 2707Strain fitness (log2 ratio) -1 0 1at 2704.731 kb on + strand, within Shew_2307at 2704.877 kb on - strand, within Shew_2307at 2704.931 kb on - strand, within Shew_2307at 2705.013 kb on + strand, within Shew_2307at 2705.091 kb on + strand, within Shew_2307

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
remove
2,704,731 + Shew_2307 0.71 +0.0
2,704,877 - Shew_2307 0.76 -0.5
2,704,931 - Shew_2307 0.78 +0.3
2,705,013 + Shew_2307 0.82 +0.4
2,705,091 + Shew_2307 0.84 -1.2

Or see this region's nucleotide sequence