Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_R0063 and Shew_1827 are separated by 205 nucleotides Shew_1827 and Shew_1828 are separated by 129 nucleotides Shew_1828 and Shew_1829 are separated by 168 nucleotides Shew_1829 and Shew_1830 are separated by 136 nucleotides
Shew_R0063: Shew_R0063 - tRNA-Leu (RefSeq), at 2,102,719 to 2,102,805
_R0063
Shew_1827: Shew_1827 - methylation site containing protein (RefSeq), at 2,103,011 to 2,103,577
_1827
Shew_1828: Shew_1828 - peptidoglycan binding domain-containing protein (RefSeq), at 2,103,707 to 2,105,083
_1828
Shew_1829: Shew_1829 - hypothetical protein (RefSeq), at 2,105,252 to 2,105,743
_1829
Shew_1830: Shew_1830 - ribosomal protein L25 (RefSeq), at 2,105,880 to 2,106,167
_1830
Position (kb)
2103
2104
2105
2106 Strain fitness (log2 ratio)
-1
0
1 at 2103.027 kb on + strand at 2103.027 kb on + strand at 2103.035 kb on - strand at 2103.865 kb on + strand, within Shew_1828 at 2104.180 kb on - strand, within Shew_1828 at 2104.457 kb on - strand, within Shew_1828 at 2104.457 kb on - strand, within Shew_1828 at 2104.689 kb on - strand, within Shew_1828 at 2104.886 kb on - strand, within Shew_1828 at 2105.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 2,103,027 + -0.7 2,103,027 + -0.2 2,103,035 - +1.7 2,103,865 + Shew_1828 0.11 +0.4 2,104,180 - Shew_1828 0.34 +1.2 2,104,457 - Shew_1828 0.54 +0.8 2,104,457 - Shew_1828 0.54 +0.9 2,104,689 - Shew_1828 0.71 +1.7 2,104,886 - Shew_1828 0.86 +0.4 2,105,242 - +0.5
Or see this region's nucleotide sequence