Strain Fitness in Shewanella loihica PV-4 around Shew_1803

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1802 and Shew_1803 are separated by 72 nucleotidesShew_1803 and Shew_1804 are separated by 144 nucleotidesShew_1804 and Shew_1805 are separated by 325 nucleotides Shew_1802: Shew_1802 - carboxy-terminal protease (RefSeq), at 2,062,300 to 2,064,345 _1802 Shew_1803: Shew_1803 - aminopeptidase N (RefSeq), at 2,064,418 to 2,066,979 _1803 Shew_1804: Shew_1804 - hypothetical protein (RefSeq), at 2,067,124 to 2,067,378 _1804 Shew_1805: Shew_1805 - hypothetical protein (RefSeq), at 2,067,704 to 2,069,752 _1805 Position (kb) 2064 2065 2066 2067Strain fitness (log2 ratio) -3 -2 -1 0 1at 2063.561 kb on + strand, within Shew_1802at 2063.868 kb on + strand, within Shew_1802at 2063.876 kb on - strand, within Shew_1802at 2064.566 kb on + strandat 2064.566 kb on + strandat 2064.574 kb on - strandat 2064.574 kb on - strandat 2064.768 kb on + strand, within Shew_1803at 2065.079 kb on - strand, within Shew_1803at 2065.263 kb on + strand, within Shew_1803at 2065.299 kb on - strand, within Shew_1803at 2065.416 kb on - strand, within Shew_1803at 2065.708 kb on - strand, within Shew_1803at 2065.724 kb on - strand, within Shew_1803at 2065.977 kb on - strand, within Shew_1803at 2066.212 kb on + strand, within Shew_1803at 2066.241 kb on - strand, within Shew_1803at 2066.545 kb on - strand, within Shew_1803at 2067.035 kb on - strandat 2067.112 kb on - strandat 2067.256 kb on + strand, within Shew_1804at 2067.769 kb on - strandat 2067.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,063,561 + Shew_1802 0.62 -3.2
2,063,868 + Shew_1802 0.77 -3.0
2,063,876 - Shew_1802 0.77 -2.4
2,064,566 + +0.9
2,064,566 + +0.9
2,064,574 - +1.7
2,064,574 - +0.3
2,064,768 + Shew_1803 0.14 -0.0
2,065,079 - Shew_1803 0.26 +0.6
2,065,263 + Shew_1803 0.33 +0.9
2,065,299 - Shew_1803 0.34 -1.0
2,065,416 - Shew_1803 0.39 +0.6
2,065,708 - Shew_1803 0.50 +1.3
2,065,724 - Shew_1803 0.51 -0.5
2,065,977 - Shew_1803 0.61 +0.3
2,066,212 + Shew_1803 0.70 +0.4
2,066,241 - Shew_1803 0.71 +0.7
2,066,545 - Shew_1803 0.83 +0.2
2,067,035 - +0.0
2,067,112 - +1.0
2,067,256 + Shew_1804 0.52 -0.4
2,067,769 - -0.3
2,067,776 - -0.1

Or see this region's nucleotide sequence