Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1795 and Shew_1796 are separated by 156 nucleotides Shew_1796 and Shew_1797 overlap by 14 nucleotides Shew_1797 and Shew_1798 overlap by 8 nucleotides
Shew_1795: Shew_1795 - diguanylate cyclase (RefSeq), at 2,055,296 to 2,056,315
_1795
Shew_1796: Shew_1796 - hypothetical protein (RefSeq), at 2,056,472 to 2,059,096
_1796
Shew_1797: Shew_1797 - paraquat-inducible protein A (RefSeq), at 2,059,083 to 2,059,715
_1797
Shew_1798: Shew_1798 - paraquat-inducible protein A (RefSeq), at 2,059,708 to 2,060,370
_1798
Position (kb)
2056
2057
2058
2059
2060 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2055.637 kb on + strand, within Shew_1795 at 2056.686 kb on + strand at 2057.078 kb on - strand, within Shew_1796 at 2057.115 kb on + strand, within Shew_1796 at 2057.172 kb on - strand, within Shew_1796 at 2057.174 kb on + strand, within Shew_1796 at 2057.943 kb on - strand, within Shew_1796 at 2058.079 kb on + strand, within Shew_1796 at 2058.769 kb on - strand, within Shew_1796 at 2058.860 kb on - strand at 2059.127 kb on - strand at 2059.521 kb on - strand, within Shew_1797 at 2060.045 kb on + strand, within Shew_1798
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 2,055,637 + Shew_1795 0.33 +0.8 2,056,686 + +2.0 2,057,078 - Shew_1796 0.23 +2.7 2,057,115 + Shew_1796 0.24 +2.7 2,057,172 - Shew_1796 0.27 +2.1 2,057,174 + Shew_1796 0.27 +2.8 2,057,943 - Shew_1796 0.56 +2.0 2,058,079 + Shew_1796 0.61 +0.9 2,058,769 - Shew_1796 0.88 +1.9 2,058,860 - +2.2 2,059,127 - +1.8 2,059,521 - Shew_1797 0.69 +2.3 2,060,045 + Shew_1798 0.51 +2.1
Or see this region's nucleotide sequence