Strain Fitness in Shewanella loihica PV-4 around Shew_1764

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1762 and Shew_1763 are separated by 11 nucleotidesShew_1763 and Shew_1764 are separated by 10 nucleotidesShew_1764 and Shew_1765 are separated by 4 nucleotides Shew_1762: Shew_1762 - hydrogenase expression/formation protein (RefSeq), at 2,014,441 to 2,015,004 _1762 Shew_1763: Shew_1763 - Ni/Fe-hydrogenase, b-type cytochrome subunit (RefSeq), at 2,015,016 to 2,015,687 _1763 Shew_1764: Shew_1764 - nickel-dependent hydrogenase, large subunit (RefSeq), at 2,015,698 to 2,017,404 _1764 Shew_1765: Shew_1765 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,017,409 to 2,018,545 _1765 Position (kb) 2015 2016 2017 2018Strain fitness (log2 ratio) -1 0 1 2at 2014.705 kb on + strand, within Shew_1762at 2014.787 kb on - strand, within Shew_1762at 2015.416 kb on - strand, within Shew_1763at 2015.416 kb on - strand, within Shew_1763at 2015.423 kb on + strand, within Shew_1763at 2015.534 kb on + strand, within Shew_1763at 2015.542 kb on - strand, within Shew_1763at 2015.847 kb on - strandat 2016.439 kb on + strand, within Shew_1764at 2016.459 kb on + strand, within Shew_1764at 2016.825 kb on - strand, within Shew_1764at 2016.948 kb on - strand, within Shew_1764at 2017.071 kb on + strand, within Shew_1764at 2017.145 kb on + strand, within Shew_1764at 2017.158 kb on + strand, within Shew_1764at 2017.168 kb on + strand, within Shew_1764at 2017.303 kb on + strandat 2017.680 kb on - strand, within Shew_1765at 2017.936 kb on - strand, within Shew_1765at 2017.956 kb on + strand, within Shew_1765at 2017.988 kb on - strand, within Shew_1765

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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2,014,705 + Shew_1762 0.47 -0.5
2,014,787 - Shew_1762 0.61 -0.3
2,015,416 - Shew_1763 0.60 +0.5
2,015,416 - Shew_1763 0.60 -0.3
2,015,423 + Shew_1763 0.61 -0.1
2,015,534 + Shew_1763 0.77 -0.0
2,015,542 - Shew_1763 0.78 +0.3
2,015,847 - +0.8
2,016,439 + Shew_1764 0.43 +2.0
2,016,459 + Shew_1764 0.45 +0.5
2,016,825 - Shew_1764 0.66 +0.1
2,016,948 - Shew_1764 0.73 +0.2
2,017,071 + Shew_1764 0.80 +1.2
2,017,145 + Shew_1764 0.85 -0.2
2,017,158 + Shew_1764 0.86 -0.5
2,017,168 + Shew_1764 0.86 +1.2
2,017,303 + -0.6
2,017,680 - Shew_1765 0.24 +0.5
2,017,936 - Shew_1765 0.46 -0.2
2,017,956 + Shew_1765 0.48 +0.5
2,017,988 - Shew_1765 0.51 +0.5

Or see this region's nucleotide sequence