Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1525 and Shew_1526 are separated by 3 nucleotides Shew_1526 and Shew_1527 are separated by 9 nucleotides Shew_1527 and Shew_1528 are separated by 34 nucleotides Shew_1528 and Shew_1529 are separated by 19 nucleotides
Shew_1525: Shew_1525 - biopolymer transport protein ExbD/TolR (RefSeq), at 1,748,698 to 1,749,132
_1525
Shew_1526: Shew_1526 - TolA family protein (RefSeq), at 1,749,136 to 1,750,071
_1526
Shew_1527: Shew_1527 - TolB domain-containing protein (RefSeq), at 1,750,081 to 1,751,406
_1527
Shew_1528: Shew_1528 - OmpA domain-containing protein (RefSeq), at 1,751,441 to 1,751,983
_1528
Shew_1529: Shew_1529 - TPR repeat-containing protein (RefSeq), at 1,752,003 to 1,752,725
_1529
Position (kb)
1750
1751
1752 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1749.245 kb on - strand, within Shew_1526 at 1749.551 kb on - strand, within Shew_1526 at 1749.810 kb on - strand, within Shew_1526 at 1749.815 kb on - strand, within Shew_1526 at 1751.140 kb on - strand, within Shew_1527 at 1751.255 kb on + strand, within Shew_1527 at 1751.601 kb on + strand, within Shew_1528 at 1751.984 kb on + strand at 1752.201 kb on - strand, within Shew_1529 at 1752.334 kb on + strand, within Shew_1529 at 1752.334 kb on + strand, within Shew_1529
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 1,749,245 - Shew_1526 0.12 -0.4 1,749,551 - Shew_1526 0.44 -3.5 1,749,810 - Shew_1526 0.72 -1.4 1,749,815 - Shew_1526 0.73 -2.7 1,751,140 - Shew_1527 0.80 -1.9 1,751,255 + Shew_1527 0.89 -1.4 1,751,601 + Shew_1528 0.29 -3.6 1,751,984 + -1.4 1,752,201 - Shew_1529 0.27 -1.1 1,752,334 + Shew_1529 0.46 -1.4 1,752,334 + Shew_1529 0.46 +0.1
Or see this region's nucleotide sequence