Strain Fitness in Shewanella loihica PV-4 around Shew_1458
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,679,469 | + | Shew_1457 | 0.26 | -0.3 | |
1,679,493 | + | Shew_1457 | 0.29 | +0.2 | |
1,679,501 | - | Shew_1457 | 0.30 | +0.4 | |
1,679,665 | - | Shew_1457 | 0.47 | +0.9 | |
1,679,966 | - | Shew_1457 | 0.79 | +0.0 | |
1,680,074 | + | +0.2 | |||
1,680,508 | + | +2.0 | |||
1,680,516 | - | +2.2 | |||
1,680,794 | + | Shew_1458 | 0.27 | +2.7 | |
1,680,885 | + | Shew_1458 | 0.34 | +2.4 | |
1,681,129 | + | Shew_1458 | 0.54 | +1.6 | |
1,681,129 | + | Shew_1458 | 0.54 | +2.5 | |
1,681,263 | + | Shew_1458 | 0.65 | +1.9 | |
1,681,357 | - | Shew_1458 | 0.73 | +1.8 | |
1,681,614 | + | +1.7 | |||
1,681,847 | - | +0.5 | |||
1,681,958 | - | +0.1 | |||
1,682,206 | + | Shew_1459 | 0.29 | -0.0 | |
1,682,244 | - | Shew_1459 | 0.39 | -1.9 |
Or see this region's nucleotide sequence