Strain Fitness in Shewanella loihica PV-4 around Shew_1458

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1457 and Shew_1458 are separated by 300 nucleotidesShew_1458 and Shew_1459 are separated by 398 nucleotidesShew_1459 and Shew_1460 are separated by 84 nucleotides Shew_1457: Shew_1457 - response regulator receiver modulated CheW protein (RefSeq), at 1,679,220 to 1,680,164 _1457 Shew_1458: Shew_1458 - serine/threonine transporter SstT (RefSeq), at 1,680,465 to 1,681,688 _1458 Shew_1459: Shew_1459 - hypothetical protein (RefSeq), at 1,682,087 to 1,682,491 _1459 Shew_1460: Shew_1460 - pseudouridine synthase (RefSeq), at 1,682,576 to 1,683,229 _1460 Position (kb) 1680 1681 1682Strain fitness (log2 ratio) -2 -1 0 1 2at 1679.469 kb on + strand, within Shew_1457at 1679.493 kb on + strand, within Shew_1457at 1679.501 kb on - strand, within Shew_1457at 1679.665 kb on - strand, within Shew_1457at 1679.966 kb on - strand, within Shew_1457at 1680.074 kb on + strandat 1680.508 kb on + strandat 1680.516 kb on - strandat 1680.794 kb on + strand, within Shew_1458at 1680.885 kb on + strand, within Shew_1458at 1681.129 kb on + strand, within Shew_1458at 1681.129 kb on + strand, within Shew_1458at 1681.263 kb on + strand, within Shew_1458at 1681.357 kb on - strand, within Shew_1458at 1681.614 kb on + strandat 1681.847 kb on - strandat 1681.958 kb on - strandat 1682.206 kb on + strand, within Shew_1459at 1682.244 kb on - strand, within Shew_1459

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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1,679,469 + Shew_1457 0.26 -0.3
1,679,493 + Shew_1457 0.29 +0.2
1,679,501 - Shew_1457 0.30 +0.4
1,679,665 - Shew_1457 0.47 +0.9
1,679,966 - Shew_1457 0.79 +0.0
1,680,074 + +0.2
1,680,508 + +2.0
1,680,516 - +2.2
1,680,794 + Shew_1458 0.27 +2.7
1,680,885 + Shew_1458 0.34 +2.4
1,681,129 + Shew_1458 0.54 +1.6
1,681,129 + Shew_1458 0.54 +2.5
1,681,263 + Shew_1458 0.65 +1.9
1,681,357 - Shew_1458 0.73 +1.8
1,681,614 + +1.7
1,681,847 - +0.5
1,681,958 - +0.1
1,682,206 + Shew_1459 0.29 -0.0
1,682,244 - Shew_1459 0.39 -1.9

Or see this region's nucleotide sequence