Strain Fitness in Shewanella loihica PV-4 around Shew_1444

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1443 and Shew_1444 are separated by 83 nucleotidesShew_1444 and Shew_1445 overlap by 1 nucleotidesShew_1445 and Shew_1446 are separated by 87 nucleotides Shew_1443: Shew_1443 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,658,689 to 1,660,512 _1443 Shew_1444: Shew_1444 - dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data), at 1,660,596 to 1,661,993 _1444 Shew_1445: Shew_1445 - dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data), at 1,661,993 to 1,662,631 _1445 Shew_1446: Shew_1446 - dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component (from data), at 1,662,719 to 1,663,729 _1446 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -2 -1 0 1at 1659.748 kb on + strand, within Shew_1443at 1659.929 kb on + strand, within Shew_1443at 1659.969 kb on + strand, within Shew_1443at 1660.215 kb on + strand, within Shew_1443at 1660.243 kb on + strand, within Shew_1443at 1660.307 kb on - strand, within Shew_1443at 1660.439 kb on - strandat 1660.834 kb on + strand, within Shew_1444at 1661.729 kb on + strand, within Shew_1444at 1661.837 kb on - strand, within Shew_1444at 1661.986 kb on - strandat 1662.196 kb on + strand, within Shew_1445at 1662.820 kb on + strand, within Shew_1446at 1662.944 kb on - strand, within Shew_1446

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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1,659,748 + Shew_1443 0.58 +0.0
1,659,929 + Shew_1443 0.68 +0.1
1,659,969 + Shew_1443 0.70 -0.0
1,660,215 + Shew_1443 0.84 +0.1
1,660,243 + Shew_1443 0.85 +0.2
1,660,307 - Shew_1443 0.89 -1.9
1,660,439 - -0.2
1,660,834 + Shew_1444 0.17 +1.5
1,661,729 + Shew_1444 0.81 +0.5
1,661,837 - Shew_1444 0.89 +0.1
1,661,986 - +0.3
1,662,196 + Shew_1445 0.32 +1.2
1,662,820 + Shew_1446 0.10 +0.0
1,662,944 - Shew_1446 0.22 +1.5

Or see this region's nucleotide sequence