Strain Fitness in Shewanella loihica PV-4 around Shew_1437

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphhA and phhB are separated by 46 nucleotidesphhB and Shew_1437 are separated by 233 nucleotidesShew_1437 and Shew_1438 are separated by 246 nucleotides Shew_1435: phhA - phenylalanine 4-monooxygenase (RefSeq), at 1,649,972 to 1,650,805 phhA Shew_1436: phhB - pterin-4-alpha-carbinolamine dehydratase (RefSeq), at 1,650,852 to 1,651,190 phhB Shew_1437: Shew_1437 - transcriptional regulator, TyrR (RefSeq), at 1,651,424 to 1,652,968 _1437 Shew_1438: Shew_1438 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 1,653,215 to 1,654,201 _1438 Position (kb) 1651 1652 1653Strain fitness (log2 ratio) -2 -1 0 1at 1650.898 kb on + strand, within phhBat 1651.142 kb on - strand, within phhBat 1651.505 kb on - strandat 1652.098 kb on - strand, within Shew_1437at 1652.700 kb on + strand, within Shew_1437at 1652.708 kb on + strand, within Shew_1437at 1652.853 kb on - strandat 1653.127 kb on + strandat 1653.182 kb on - strandat 1653.182 kb on - strandat 1653.280 kb on + strandat 1653.736 kb on + strand, within Shew_1438

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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1,650,898 + phhB Shew_1436 0.14 -1.9
1,651,142 - phhB Shew_1436 0.86 +0.3
1,651,505 - -1.9
1,652,098 - Shew_1437 0.44 -2.1
1,652,700 + Shew_1437 0.83 -2.5
1,652,708 + Shew_1437 0.83 -1.9
1,652,853 - -1.9
1,653,127 + -0.6
1,653,182 - -0.3
1,653,182 - +0.8
1,653,280 + -2.5
1,653,736 + Shew_1438 0.53 -2.5

Or see this region's nucleotide sequence