Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1338 and Shew_1339 overlap by 4 nucleotides Shew_1339 and Shew_1340 are separated by 78 nucleotides Shew_1340 and Shew_1341 are separated by 10 nucleotides Shew_1341 and flgA are separated by 120 nucleotides
Shew_1338: Shew_1338 - hypothetical protein (RefSeq), at 1,549,666 to 1,550,292
_1338
Shew_1339: Shew_1339 - hypothetical protein (RefSeq), at 1,550,289 to 1,550,735
_1339
Shew_1340: Shew_1340 - FlgN family protein (RefSeq), at 1,550,814 to 1,551,239
_1340
Shew_1341: Shew_1341 - anti-sigma-28 factor, FlgM (RefSeq), at 1,551,250 to 1,551,567
_1341
Shew_1342: flgA - flagellar basal body P-ring biosynthesis protein FlgA (RefSeq), at 1,551,688 to 1,552,395
flgA
Position (kb) 1551
1552 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1550.279 kb on - strand at 1550.610 kb on - strand, within Shew_1339 at 1550.613 kb on + strand, within Shew_1339 at 1550.862 kb on - strand, within Shew_1340 at 1550.898 kb on + strand, within Shew_1340 at 1550.898 kb on + strand, within Shew_1340 at 1551.053 kb on - strand, within Shew_1340 at 1551.053 kb on - strand, within Shew_1340 at 1551.182 kb on + strand, within Shew_1340 at 1551.182 kb on + strand, within Shew_1340 at 1551.182 kb on + strand, within Shew_1340 at 1551.182 kb on + strand, within Shew_1340 at 1551.190 kb on - strand, within Shew_1340 at 1551.190 kb on - strand, within Shew_1340 at 1551.190 kb on - strand, within Shew_1340 at 1551.190 kb on - strand, within Shew_1340 at 1551.190 kb on - strand, within Shew_1340 at 1551.515 kb on - strand, within Shew_1341 at 1551.970 kb on - strand, within flgA
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 1,550,279 - +0.4 1,550,610 - Shew_1339 0.72 +0.2 1,550,613 + Shew_1339 0.72 -0.7 1,550,862 - Shew_1340 0.11 +0.2 1,550,898 + Shew_1340 0.20 -0.2 1,550,898 + Shew_1340 0.20 +0.2 1,551,053 - Shew_1340 0.56 -0.9 1,551,053 - Shew_1340 0.56 +0.1 1,551,182 + Shew_1340 0.86 +0.6 1,551,182 + Shew_1340 0.86 +0.2 1,551,182 + Shew_1340 0.86 +2.7 1,551,182 + Shew_1340 0.86 +1.4 1,551,190 - Shew_1340 0.88 +0.0 1,551,190 - Shew_1340 0.88 +0.6 1,551,190 - Shew_1340 0.88 +0.5 1,551,190 - Shew_1340 0.88 -0.3 1,551,190 - Shew_1340 0.88 -0.1 1,551,515 - Shew_1341 0.83 -4.3 1,551,970 - flgA Shew_1342 0.40 -2.3
Or see this region's nucleotide sequence