Strain Fitness in Shewanella loihica PV-4 around Shew_1122
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,296,831 | + | Shew_1120 | 0.50 | +0.2 | |
1,297,037 | - | Shew_1120 | 0.87 | -0.5 | |
1,297,170 | + | +1.1 | |||
1,297,249 | + | Shew_1121 | 0.16 | +0.3 | |
1,297,406 | + | Shew_1121 | 0.46 | +0.2 | |
1,297,436 | + | Shew_1121 | 0.51 | +0.6 | |
1,297,814 | - | Shew_1122 | 0.15 | -5.3 | |
1,297,983 | + | Shew_1122 | 0.76 | -3.0 | |
1,298,279 | - | Shew_1123 | 0.20 | -0.5 | |
1,298,533 | + | Shew_1123 | 0.43 | -0.8 | |
1,298,781 | - | Shew_1123 | 0.66 | +0.5 | |
1,298,920 | + | Shew_1123 | 0.78 | +0.2 | |
1,298,943 | + | Shew_1123 | 0.80 | +0.6 | |
1,298,944 | + | Shew_1123 | 0.80 | +0.2 | |
1,299,009 | + | Shew_1123 | 0.86 | +0.6 |
Or see this region's nucleotide sequence