Strain Fitness in Shewanella loihica PV-4 around Shew_0895

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0893 and Shew_0894 are separated by 191 nucleotidesShew_0894 and Shew_0895 are separated by 78 nucleotidesShew_0895 and Shew_0896 are separated by 10 nucleotidesShew_0896 and Shew_0897 overlap by 1 nucleotides Shew_0893: Shew_0893 - hypothetical protein (RefSeq), at 1,014,521 to 1,015,060 _0893 Shew_0894: Shew_0894 - hypothetical protein (RefSeq), at 1,015,252 to 1,015,524 _0894 Shew_0895: Shew_0895 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,015,603 to 1,016,886 _0895 Shew_0896: Shew_0896 - two component transcriptional regulator (RefSeq), at 1,016,897 to 1,017,610 _0896 Shew_0897: Shew_0897 - hypothetical protein (RefSeq), at 1,017,610 to 1,018,011 _0897 Position (kb) 1015 1016 1017Strain fitness (log2 ratio) -1 0 1 2 3at 1014.805 kb on + strand, within Shew_0893at 1014.858 kb on - strand, within Shew_0893at 1014.911 kb on - strand, within Shew_0893at 1015.053 kb on - strandat 1015.157 kb on + strandat 1015.733 kb on - strand, within Shew_0895at 1015.833 kb on + strand, within Shew_0895at 1016.083 kb on + strand, within Shew_0895at 1016.093 kb on + strand, within Shew_0895at 1016.197 kb on + strand, within Shew_0895at 1016.327 kb on + strand, within Shew_0895at 1016.335 kb on - strand, within Shew_0895at 1016.428 kb on - strand, within Shew_0895at 1016.693 kb on + strand, within Shew_0895at 1016.855 kb on + strandat 1016.867 kb on - strandat 1016.867 kb on - strandat 1017.316 kb on + strand, within Shew_0896at 1017.406 kb on + strand, within Shew_0896at 1017.406 kb on + strand, within Shew_0896at 1017.414 kb on - strand, within Shew_0896at 1017.414 kb on - strand, within Shew_0896at 1017.414 kb on - strand, within Shew_0896at 1017.414 kb on - strand, within Shew_0896at 1017.414 kb on - strand, within Shew_0896at 1017.414 kb on - strand, within Shew_0896at 1017.484 kb on - strand, within Shew_0896at 1017.775 kb on + strand, within Shew_0897at 1017.851 kb on - strand, within Shew_0897

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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1,014,805 + Shew_0893 0.53 +1.2
1,014,858 - Shew_0893 0.62 +0.4
1,014,911 - Shew_0893 0.72 -0.1
1,015,053 - +0.1
1,015,157 + +0.1
1,015,733 - Shew_0895 0.10 +0.8
1,015,833 + Shew_0895 0.18 +1.6
1,016,083 + Shew_0895 0.37 +1.1
1,016,093 + Shew_0895 0.38 +1.1
1,016,197 + Shew_0895 0.46 +1.7
1,016,327 + Shew_0895 0.56 +2.9
1,016,335 - Shew_0895 0.57 +1.3
1,016,428 - Shew_0895 0.64 +1.0
1,016,693 + Shew_0895 0.85 +2.0
1,016,855 + +0.9
1,016,867 - +0.9
1,016,867 - +0.8
1,017,316 + Shew_0896 0.59 -1.1
1,017,406 + Shew_0896 0.71 +0.5
1,017,406 + Shew_0896 0.71 +1.1
1,017,414 - Shew_0896 0.72 +1.0
1,017,414 - Shew_0896 0.72 +0.0
1,017,414 - Shew_0896 0.72 +0.1
1,017,414 - Shew_0896 0.72 +0.8
1,017,414 - Shew_0896 0.72 -0.5
1,017,414 - Shew_0896 0.72 +0.6
1,017,484 - Shew_0896 0.82 +0.2
1,017,775 + Shew_0897 0.41 +0.7
1,017,851 - Shew_0897 0.60 -0.2

Or see this region's nucleotide sequence