Strain Fitness in Shewanella loihica PV-4 around Shew_0689

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0688 and Shew_0689 are separated by 318 nucleotidesShew_0689 and Shew_0690 are separated by 171 nucleotides Shew_0688: Shew_0688 - dihydropteridine reductase (RefSeq), at 781,824 to 782,477 _0688 Shew_0689: Shew_0689 - hypothetical protein (RefSeq), at 782,796 to 783,626 _0689 Shew_0690: Shew_0690 - endonuclease/exonuclease/phosphatase (RefSeq), at 783,798 to 784,871 _0690 Position (kb) 782 783 784Strain fitness (log2 ratio) -1 0 1at 781.907 kb on + strand, within Shew_0688at 782.037 kb on - strand, within Shew_0688at 782.037 kb on - strand, within Shew_0688at 782.440 kb on - strandat 782.440 kb on + strandat 783.331 kb on + strand, within Shew_0689at 783.339 kb on - strand, within Shew_0689at 783.722 kb on + strandat 783.790 kb on - strandat 783.841 kb on + strandat 783.896 kb on + strandat 783.904 kb on - strandat 784.095 kb on + strand, within Shew_0690at 784.137 kb on - strand, within Shew_0690at 784.605 kb on - strand, within Shew_0690

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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781,907 + Shew_0688 0.13 +0.3
782,037 - Shew_0688 0.33 -0.5
782,037 - Shew_0688 0.33 +0.2
782,440 - -1.5
782,440 + +1.5
783,331 + Shew_0689 0.64 +0.2
783,339 - Shew_0689 0.65 +0.9
783,722 + +0.3
783,790 - +0.3
783,841 + +0.6
783,896 + +0.4
783,904 - -0.2
784,095 + Shew_0690 0.28 +1.0
784,137 - Shew_0690 0.32 +0.1
784,605 - Shew_0690 0.75 -0.6

Or see this region's nucleotide sequence