Strain Fitness in Shewanella loihica PV-4 around Shew_0675

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0674 and Shew_0675 are separated by 202 nucleotidesShew_0675 and Shew_0676 are separated by 37 nucleotides Shew_0674: Shew_0674 - major facilitator transporter (RefSeq), at 767,054 to 768,220 _0674 Shew_0675: Shew_0675 - hypothetical protein (RefSeq), at 768,423 to 769,868 _0675 Shew_0676: Shew_0676 - putative lipoprotein (RefSeq), at 769,906 to 771,054 _0676 Position (kb) 768 769 770Strain fitness (log2 ratio) -1 0 1at 767.645 kb on + strand, within Shew_0674at 767.780 kb on + strand, within Shew_0674at 767.886 kb on - strand, within Shew_0674at 767.912 kb on + strand, within Shew_0674at 768.450 kb on - strandat 768.701 kb on - strand, within Shew_0675at 768.783 kb on + strand, within Shew_0675at 769.087 kb on - strand, within Shew_0675at 769.664 kb on + strand, within Shew_0675at 769.725 kb on + strandat 769.725 kb on + strandat 769.985 kb on + strandat 770.070 kb on + strand, within Shew_0676at 770.759 kb on + strand, within Shew_0676at 770.759 kb on + strand, within Shew_0676at 770.765 kb on - strand, within Shew_0676at 770.767 kb on - strand, within Shew_0676

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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767,645 + Shew_0674 0.51 +0.3
767,780 + Shew_0674 0.62 +0.3
767,886 - Shew_0674 0.71 +0.8
767,912 + Shew_0674 0.74 +0.5
768,450 - -1.1
768,701 - Shew_0675 0.19 +1.2
768,783 + Shew_0675 0.25 +1.2
769,087 - Shew_0675 0.46 -1.4
769,664 + Shew_0675 0.86 +0.5
769,725 + -0.0
769,725 + -0.1
769,985 + -0.1
770,070 + Shew_0676 0.14 +0.6
770,759 + Shew_0676 0.74 -1.6
770,759 + Shew_0676 0.74 +0.6
770,765 - Shew_0676 0.75 +0.6
770,767 - Shew_0676 0.75 -0.6

Or see this region's nucleotide sequence