Strain Fitness in Shewanella loihica PV-4 around Shew_0656

Experiment: Thallium(I) acetate 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0655 and Shew_0656 are separated by 24 nucleotidesShew_0656 and Shew_0657 are separated by 174 nucleotides Shew_0655: Shew_0655 - peptidase M16 domain-containing protein (RefSeq), at 742,547 to 743,971 _0655 Shew_0656: Shew_0656 - anaerobic nitric oxide reductase transcription regulator (RefSeq), at 743,996 to 745,531 _0656 Shew_0657: Shew_0657 - putative nitric oxide reductase (subunit B) transmembrane protein (RefSeq), at 745,706 to 747,997 _0657 Position (kb) 743 744 745 746Strain fitness (log2 ratio) -1 0 1at 743.011 kb on + strand, within Shew_0655at 743.128 kb on + strand, within Shew_0655at 743.262 kb on - strand, within Shew_0655at 743.703 kb on + strand, within Shew_0655at 743.766 kb on - strand, within Shew_0655at 743.809 kb on + strand, within Shew_0655at 743.809 kb on + strand, within Shew_0655at 743.817 kb on - strand, within Shew_0655at 743.854 kb on + strandat 744.007 kb on - strandat 744.088 kb on + strandat 744.104 kb on + strandat 744.130 kb on - strandat 744.179 kb on + strand, within Shew_0656at 744.179 kb on + strand, within Shew_0656at 744.187 kb on - strand, within Shew_0656at 744.345 kb on - strand, within Shew_0656at 744.418 kb on + strand, within Shew_0656at 744.773 kb on + strand, within Shew_0656at 744.922 kb on + strand, within Shew_0656at 745.193 kb on + strand, within Shew_0656at 745.308 kb on - strand, within Shew_0656at 745.308 kb on - strand, within Shew_0656at 745.308 kb on - strand, within Shew_0656at 745.969 kb on - strand, within Shew_0657at 746.001 kb on + strand, within Shew_0657at 746.009 kb on - strand, within Shew_0657at 746.282 kb on - strand, within Shew_0657at 746.419 kb on + strand, within Shew_0657

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
remove
743,011 + Shew_0655 0.33 +0.3
743,128 + Shew_0655 0.41 -0.4
743,262 - Shew_0655 0.50 -1.0
743,703 + Shew_0655 0.81 -0.1
743,766 - Shew_0655 0.86 -0.2
743,809 + Shew_0655 0.89 +0.2
743,809 + Shew_0655 0.89 +0.1
743,817 - Shew_0655 0.89 +0.4
743,854 + +0.5
744,007 - +0.2
744,088 + -0.0
744,104 + +0.3
744,130 - +0.0
744,179 + Shew_0656 0.12 -0.0
744,179 + Shew_0656 0.12 -0.0
744,187 - Shew_0656 0.12 +0.1
744,345 - Shew_0656 0.23 -0.0
744,418 + Shew_0656 0.27 -0.9
744,773 + Shew_0656 0.51 +0.2
744,922 + Shew_0656 0.60 -0.2
745,193 + Shew_0656 0.78 -0.2
745,308 - Shew_0656 0.85 -0.0
745,308 - Shew_0656 0.85 -0.8
745,308 - Shew_0656 0.85 -0.7
745,969 - Shew_0657 0.11 -1.1
746,001 + Shew_0657 0.13 -0.7
746,009 - Shew_0657 0.13 +0.4
746,282 - Shew_0657 0.25 -0.1
746,419 + Shew_0657 0.31 -0.5

Or see this region's nucleotide sequence