Strain Fitness in Shewanella loihica PV-4 around Shew_0556

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0555 and Shew_0556 are separated by 124 nucleotidesShew_0556 and Shew_0557 are separated by 8 nucleotidesShew_0557 and Shew_0558 are separated by 43 nucleotides Shew_0555: Shew_0555 - MscS mechanosensitive ion channel (RefSeq), at 626,928 to 630,110 _0555 Shew_0556: Shew_0556 - hypothetical protein (RefSeq), at 630,235 to 631,125 _0556 Shew_0557: Shew_0557 - phosphatidylserine decarboxylase (RefSeq), at 631,134 to 631,994 _0557 Shew_0558: Shew_0558 - ribosome-associated GTPase (RefSeq), at 632,038 to 633,051 _0558 Position (kb) 630 631 632Strain fitness (log2 ratio) -1 0 1at 629.773 kb on - strand, within Shew_0555at 629.842 kb on - strandat 629.866 kb on + strandat 630.036 kb on + strandat 630.546 kb on + strand, within Shew_0556at 630.645 kb on - strand, within Shew_0556at 630.683 kb on + strand, within Shew_0556

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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629,773 - Shew_0555 0.89 +0.3
629,842 - +0.2
629,866 + +0.2
630,036 + +1.0
630,546 + Shew_0556 0.35 -0.3
630,645 - Shew_0556 0.46 +0.4
630,683 + Shew_0556 0.50 -1.0

Or see this region's nucleotide sequence