Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0537 and Shew_0538 are separated by 181 nucleotides Shew_0538 and Shew_0539 are separated by 18 nucleotides Shew_0539 and Shew_0540 are separated by 15 nucleotides Shew_0540 and Shew_0541 are separated by 49 nucleotides Shew_0541 and Shew_0542 are separated by 12 nucleotides
Shew_0537: Shew_0537 - hypothetical protein (RefSeq), at 610,364 to 610,642
_0537
Shew_0538: Shew_0538 - phage shock protein C, PspC (RefSeq), at 610,824 to 611,030
_0538
Shew_0539: Shew_0539 - hypothetical protein (RefSeq), at 611,049 to 611,408
_0539
Shew_0540: Shew_0540 - enoyl-CoA hydratase/isomerase (RefSeq), at 611,424 to 612,161
_0540
Shew_0541: Shew_0541 - hypothetical protein (RefSeq), at 612,211 to 612,678
_0541
Shew_0542: Shew_0542 - hypothetical protein (RefSeq), at 612,691 to 613,662
_0542
Position (kb) 611
612
613 Strain fitness (log2 ratio) -1
0
1 at 610.425 kb on - strand, within Shew_0537 at 610.714 kb on - strand at 610.745 kb on + strand at 610.745 kb on + strand at 610.745 kb on + strand at 610.745 kb on + strand at 610.753 kb on - strand at 610.753 kb on - strand at 610.879 kb on + strand, within Shew_0538 at 611.385 kb on + strand at 611.385 kb on + strand at 611.385 kb on + strand at 611.817 kb on - strand, within Shew_0540 at 611.892 kb on - strand, within Shew_0540 at 612.080 kb on + strand, within Shew_0540 at 612.560 kb on + strand, within Shew_0541 at 612.689 kb on - strand at 612.704 kb on - strand at 612.785 kb on + strand at 612.785 kb on + strand at 612.819 kb on + strand, within Shew_0542
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 610,425 - Shew_0537 0.22 +0.8 610,714 - +0.5 610,745 + -0.5 610,745 + +0.8 610,745 + +0.5 610,745 + -0.2 610,753 - +0.1 610,753 - +1.0 610,879 + Shew_0538 0.27 -0.7 611,385 + -0.6 611,385 + +0.1 611,385 + +1.1 611,817 - Shew_0540 0.53 +0.8 611,892 - Shew_0540 0.63 -1.0 612,080 + Shew_0540 0.89 +0.4 612,560 + Shew_0541 0.75 -0.4 612,689 - +0.5 612,704 - -0.2 612,785 + +0.3 612,785 + -0.9 612,819 + Shew_0542 0.13 -0.6
Or see this region's nucleotide sequence