Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0442 and Shew_0443 are separated by 173 nucleotides Shew_0443 and Shew_0444 are separated by 144 nucleotides
Shew_0442: Shew_0442 - aldo/keto reductase (RefSeq), at 492,128 to 493,018
_0442
Shew_0443: Shew_0443 - formate--tetrahydrofolate ligase (RefSeq), at 493,192 to 494,886
_0443
Shew_0444: Shew_0444 - MscS mechanosensitive ion channel (RefSeq), at 495,031 to 496,653
_0444
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 492.252 kb on - strand, within Shew_0442 at 492.401 kb on + strand, within Shew_0442 at 492.409 kb on - strand, within Shew_0442 at 492.460 kb on + strand, within Shew_0442 at 492.468 kb on - strand, within Shew_0442 at 492.655 kb on + strand, within Shew_0442 at 492.751 kb on + strand, within Shew_0442 at 492.870 kb on + strand, within Shew_0442 at 493.004 kb on + strand at 493.005 kb on - strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.122 kb on - strand at 493.187 kb on + strand at 493.234 kb on - strand at 493.302 kb on + strand at 493.406 kb on - strand, within Shew_0443 at 493.413 kb on - strand, within Shew_0443 at 493.415 kb on + strand, within Shew_0443 at 493.415 kb on + strand, within Shew_0443 at 493.423 kb on - strand, within Shew_0443 at 493.590 kb on + strand, within Shew_0443 at 493.774 kb on - strand, within Shew_0443 at 493.975 kb on + strand, within Shew_0443 at 494.107 kb on - strand, within Shew_0443 at 494.729 kb on + strand at 494.800 kb on - strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.888 kb on - strand at 495.159 kb on + strand at 495.328 kb on + strand, within Shew_0444 at 495.448 kb on - strand, within Shew_0444 at 495.549 kb on + strand, within Shew_0444 at 495.585 kb on - strand, within Shew_0444
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 492,252 - Shew_0442 0.14 -0.1 492,401 + Shew_0442 0.31 +0.5 492,409 - Shew_0442 0.32 +0.5 492,460 + Shew_0442 0.37 +0.9 492,468 - Shew_0442 0.38 -1.3 492,655 + Shew_0442 0.59 +0.5 492,751 + Shew_0442 0.70 -0.0 492,870 + Shew_0442 0.83 +0.7 493,004 + -0.7 493,005 - +0.1 493,014 + +0.7 493,014 + +0.4 493,014 + +0.2 493,014 + -0.1 493,014 + +0.3 493,022 - +0.4 493,022 - +0.1 493,022 - +0.1 493,022 - +3.2 493,022 - +0.1 493,022 - +0.4 493,122 - +0.5 493,187 + +0.4 493,234 - -3.1 493,302 + +0.2 493,406 - Shew_0443 0.13 +0.2 493,413 - Shew_0443 0.13 +0.9 493,415 + Shew_0443 0.13 +0.5 493,415 + Shew_0443 0.13 +0.3 493,423 - Shew_0443 0.14 +0.5 493,590 + Shew_0443 0.23 +0.4 493,774 - Shew_0443 0.34 +0.3 493,975 + Shew_0443 0.46 +0.6 494,107 - Shew_0443 0.54 -0.2 494,729 + +0.2 494,800 - -0.3 494,880 + +0.7 494,880 + +0.0 494,880 + +0.5 494,880 + +0.5 494,880 + +0.3 494,888 - +0.1 495,159 + +0.5 495,328 + Shew_0444 0.18 +0.6 495,448 - Shew_0444 0.26 +0.6 495,549 + Shew_0444 0.32 +0.8 495,585 - Shew_0444 0.34 +1.2
Or see this region's nucleotide sequence