Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0332 and Shew_0333 are separated by 144 nucleotides Shew_0333 and Shew_0334 are separated by 46 nucleotides Shew_0334 and sdhB overlap by 4 nucleotides sdhB and Shew_0336 are separated by 191 nucleotides
Shew_0332: Shew_0332 - fumarate reductase cytochrome b-556 subunit (RefSeq), at 377,079 to 377,801
_0332
Shew_0333: Shew_0333 - fumarate reductase respiratory complex, transmembrane subunit (RefSeq), at 377,946 to 378,617
_0333
Shew_0334: Shew_0334 - fumarate reductase flavoprotein subunit (RefSeq), at 378,664 to 380,670
_0334
Shew_0335: sdhB - fumarate reductase iron-sulfur subunit (RefSeq), at 380,667 to 381,398
sdhB
Shew_0336: Shew_0336 - LysR family transcriptional regulator (RefSeq), at 381,590 to 382,513
_0336
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -1
0
1 at 377.812 kb on - strand at 378.023 kb on - strand, within Shew_0333 at 378.037 kb on - strand, within Shew_0333 at 378.047 kb on - strand, within Shew_0333 at 378.047 kb on - strand, within Shew_0333 at 378.416 kb on + strand, within Shew_0333 at 378.576 kb on + strand at 378.576 kb on + strand at 378.771 kb on + strand at 378.828 kb on + strand at 378.836 kb on - strand at 379.118 kb on - strand, within Shew_0334 at 379.143 kb on + strand, within Shew_0334 at 379.143 kb on + strand, within Shew_0334 at 379.143 kb on + strand, within Shew_0334 at 379.143 kb on + strand, within Shew_0334 at 379.143 kb on + strand, within Shew_0334 at 379.151 kb on - strand, within Shew_0334 at 379.421 kb on - strand, within Shew_0334 at 379.670 kb on + strand, within Shew_0334 at 379.679 kb on + strand, within Shew_0334 at 380.125 kb on - strand, within Shew_0334 at 380.125 kb on - strand, within Shew_0334 at 380.125 kb on - strand, within Shew_0334 at 380.157 kb on + strand, within Shew_0334 at 380.163 kb on - strand, within Shew_0334 at 380.252 kb on - strand, within Shew_0334 at 380.363 kb on + strand, within Shew_0334 at 380.367 kb on - strand, within Shew_0334 at 380.371 kb on - strand, within Shew_0334 at 380.371 kb on - strand, within Shew_0334 at 380.567 kb on + strand at 380.607 kb on + strand at 380.678 kb on - strand at 380.915 kb on - strand, within sdhB at 380.999 kb on + strand, within sdhB at 381.010 kb on + strand, within sdhB at 381.155 kb on - strand, within sdhB
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml remove 377,812 - -0.1 378,023 - Shew_0333 0.11 +0.0 378,037 - Shew_0333 0.14 -0.3 378,047 - Shew_0333 0.15 -0.6 378,047 - Shew_0333 0.15 +0.7 378,416 + Shew_0333 0.70 +0.0 378,576 + -0.5 378,576 + +1.1 378,771 + -0.2 378,828 + +0.4 378,836 - +0.2 379,118 - Shew_0334 0.23 -0.5 379,143 + Shew_0334 0.24 +0.7 379,143 + Shew_0334 0.24 +0.4 379,143 + Shew_0334 0.24 +0.5 379,143 + Shew_0334 0.24 +0.4 379,143 + Shew_0334 0.24 +0.3 379,151 - Shew_0334 0.24 -0.5 379,421 - Shew_0334 0.38 +0.5 379,670 + Shew_0334 0.50 +0.5 379,679 + Shew_0334 0.51 +0.4 380,125 - Shew_0334 0.73 +1.1 380,125 - Shew_0334 0.73 -0.1 380,125 - Shew_0334 0.73 +0.6 380,157 + Shew_0334 0.74 +0.5 380,163 - Shew_0334 0.75 -0.6 380,252 - Shew_0334 0.79 +1.1 380,363 + Shew_0334 0.85 -0.2 380,367 - Shew_0334 0.85 -0.1 380,371 - Shew_0334 0.85 +0.0 380,371 - Shew_0334 0.85 +0.7 380,567 + +0.2 380,607 + +0.2 380,678 - +0.1 380,915 - sdhB Shew_0335 0.34 +0.5 380,999 + sdhB Shew_0335 0.45 +0.4 381,010 + sdhB Shew_0335 0.47 +1.4 381,155 - sdhB Shew_0335 0.67 -0.4
Or see this region's nucleotide sequence