Strain Fitness in Shewanella loihica PV-4 around Shew_0263

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0262 and Shew_0263 are separated by 70 nucleotidesShew_0263 and Shew_0264 overlap by 4 nucleotides Shew_0262: Shew_0262 - hypothetical protein (RefSeq), at 280,966 to 282,420 _0262 Shew_0263: Shew_0263 - hypothetical protein (RefSeq), at 282,491 to 282,796 _0263 Shew_0264: Shew_0264 - serine/threonine protein kinase (RefSeq), at 282,793 to 283,794 _0264 Position (kb) 282 283Strain fitness (log2 ratio) -1 0 1at 281.534 kb on + strand, within Shew_0262at 281.537 kb on - strand, within Shew_0262at 281.552 kb on + strand, within Shew_0262at 281.560 kb on - strand, within Shew_0262at 281.613 kb on + strand, within Shew_0262at 281.923 kb on + strand, within Shew_0262at 282.023 kb on + strand, within Shew_0262at 282.296 kb on - strandat 282.601 kb on + strand, within Shew_0263at 283.020 kb on + strand, within Shew_0264at 283.087 kb on + strand, within Shew_0264at 283.157 kb on + strand, within Shew_0264at 283.157 kb on + strand, within Shew_0264at 283.165 kb on - strand, within Shew_0264at 283.347 kb on - strand, within Shew_0264at 283.356 kb on + strand, within Shew_0264

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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281,534 + Shew_0262 0.39 +0.2
281,537 - Shew_0262 0.39 +0.4
281,552 + Shew_0262 0.40 -0.1
281,560 - Shew_0262 0.41 +0.0
281,613 + Shew_0262 0.44 +0.2
281,923 + Shew_0262 0.66 -0.2
282,023 + Shew_0262 0.73 +0.2
282,296 - -0.1
282,601 + Shew_0263 0.36 -0.3
283,020 + Shew_0264 0.23 -0.5
283,087 + Shew_0264 0.29 +0.5
283,157 + Shew_0264 0.36 +0.1
283,157 + Shew_0264 0.36 +0.5
283,165 - Shew_0264 0.37 +0.4
283,347 - Shew_0264 0.55 +0.8
283,356 + Shew_0264 0.56 +0.2

Or see this region's nucleotide sequence