Strain Fitness in Shewanella loihica PV-4 around Shew_0234

Experiment: Thallium(I) acetate 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0233 and Shew_0234 are separated by 74 nucleotidesShew_0234 and Shew_0235 are separated by 13 nucleotides Shew_0233: Shew_0233 - hypothetical protein (RefSeq), at 247,659 to 250,001 _0233 Shew_0234: Shew_0234 - hypothetical protein (RefSeq), at 250,076 to 250,435 _0234 Shew_0235: Shew_0235 - isochorismatase hydrolase (RefSeq), at 250,449 to 251,399 _0235 Position (kb) 250 251Strain fitness (log2 ratio) -1 0 1at 249.280 kb on + strand, within Shew_0233at 249.635 kb on - strand, within Shew_0233at 249.635 kb on - strand, within Shew_0233at 249.818 kb on + strandat 249.982 kb on - strandat 250.144 kb on + strand, within Shew_0234at 250.151 kb on + strand, within Shew_0234at 250.179 kb on - strand, within Shew_0234at 250.224 kb on + strand, within Shew_0234at 250.481 kb on + strandat 250.659 kb on + strand, within Shew_0235at 250.659 kb on + strand, within Shew_0235at 250.662 kb on - strand, within Shew_0235at 250.667 kb on - strand, within Shew_0235at 250.667 kb on - strand, within Shew_0235at 250.936 kb on + strand, within Shew_0235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
remove
249,280 + Shew_0233 0.69 +0.7
249,635 - Shew_0233 0.84 +0.2
249,635 - Shew_0233 0.84 +0.1
249,818 + -0.3
249,982 - +0.4
250,144 + Shew_0234 0.19 +0.4
250,151 + Shew_0234 0.21 +0.3
250,179 - Shew_0234 0.29 +0.2
250,224 + Shew_0234 0.41 +1.1
250,481 + +0.1
250,659 + Shew_0235 0.22 +0.5
250,659 + Shew_0235 0.22 +0.5
250,662 - Shew_0235 0.22 +0.2
250,667 - Shew_0235 0.23 -0.1
250,667 - Shew_0235 0.23 +0.8
250,936 + Shew_0235 0.51 -0.1

Or see this region's nucleotide sequence