Strain Fitness in Shewanella loihica PV-4 around Shew_0106

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0105 and Shew_0106 are separated by 207 nucleotidesShew_0106 and Shew_0107 are separated by 33 nucleotides Shew_0105: Shew_0105 - peptidase M14, carboxypeptidase A (RefSeq), at 113,788 to 116,325 _0105 Shew_0106: Shew_0106 - putative DNA uptake protein (RefSeq), at 116,533 to 117,111 _0106 Shew_0107: Shew_0107 - MATE efflux family protein (RefSeq), at 117,145 to 118,491 _0107 Position (kb) 116 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1at 115.619 kb on + strand, within Shew_0105at 115.763 kb on - strand, within Shew_0105at 115.854 kb on - strand, within Shew_0105at 116.013 kb on - strand, within Shew_0105at 116.037 kb on - strand, within Shew_0105at 116.093 kb on + strandat 116.109 kb on + strandat 116.119 kb on + strandat 116.208 kb on + strandat 116.208 kb on + strandat 116.273 kb on + strandat 116.275 kb on + strandat 116.283 kb on - strandat 116.283 kb on + strandat 116.388 kb on + strandat 116.441 kb on + strandat 117.200 kb on - strandat 117.364 kb on - strand, within Shew_0107at 117.395 kb on + strand, within Shew_0107at 117.544 kb on - strand, within Shew_0107at 117.687 kb on + strand, within Shew_0107at 117.898 kb on + strand, within Shew_0107at 117.898 kb on + strand, within Shew_0107at 117.969 kb on + strand, within Shew_0107at 117.998 kb on + strand, within Shew_0107

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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115,619 + Shew_0105 0.72 +1.5
115,763 - Shew_0105 0.78 -1.8
115,854 - Shew_0105 0.81 -1.1
116,013 - Shew_0105 0.88 -0.6
116,037 - Shew_0105 0.89 +0.1
116,093 + +0.1
116,109 + +0.2
116,119 + +1.0
116,208 + -0.2
116,208 + +0.1
116,273 + +0.1
116,275 + +0.0
116,283 - -0.8
116,283 + -0.8
116,388 + -0.0
116,441 + -1.0
117,200 - +0.1
117,364 - Shew_0107 0.16 -0.4
117,395 + Shew_0107 0.19 -0.9
117,544 - Shew_0107 0.30 -0.3
117,687 + Shew_0107 0.40 +1.0
117,898 + Shew_0107 0.56 -2.7
117,898 + Shew_0107 0.56 -1.8
117,969 + Shew_0107 0.61 -3.4
117,998 + Shew_0107 0.63 -0.5

Or see this region's nucleotide sequence