Strain Fitness in Shewanella loihica PV-4 around Shew_0019
Experiment: Thallium(I) acetate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 10 mg/ml |
---|---|---|---|---|---|
remove | |||||
20,088 | + | fadA | Shew_0018 | 0.20 | -3.1 |
20,162 | + | fadA | Shew_0018 | 0.26 | -0.5 |
20,297 | + | fadA | Shew_0018 | 0.38 | -1.9 |
20,660 | - | fadA | Shew_0018 | 0.69 | +0.3 |
20,836 | - | fadA | Shew_0018 | 0.84 | -0.1 |
20,916 | - | -1.1 | |||
20,981 | - | -0.2 | |||
21,160 | - | -1.5 | |||
21,160 | - | -2.2 | |||
21,192 | - | -1.3 | |||
21,216 | - | -0.5 | |||
21,369 | + | fadB | Shew_0019 | 0.15 | -1.6 |
21,417 | - | fadB | Shew_0019 | 0.18 | -0.8 |
21,457 | + | fadB | Shew_0019 | 0.19 | -0.8 |
21,544 | + | fadB | Shew_0019 | 0.23 | -1.8 |
21,557 | - | fadB | Shew_0019 | 0.24 | -1.7 |
21,784 | - | fadB | Shew_0019 | 0.35 | -0.9 |
21,855 | - | fadB | Shew_0019 | 0.38 | -1.5 |
21,870 | - | fadB | Shew_0019 | 0.39 | -1.0 |
21,882 | - | fadB | Shew_0019 | 0.39 | +1.8 |
22,031 | + | fadB | Shew_0019 | 0.46 | -1.8 |
22,039 | - | fadB | Shew_0019 | 0.46 | -2.0 |
22,131 | - | fadB | Shew_0019 | 0.51 | -1.3 |
22,131 | - | fadB | Shew_0019 | 0.51 | -0.8 |
22,345 | - | fadB | Shew_0019 | 0.61 | +0.7 |
22,384 | + | fadB | Shew_0019 | 0.63 | -1.7 |
22,452 | - | fadB | Shew_0019 | 0.66 | -1.2 |
22,452 | - | fadB | Shew_0019 | 0.66 | -2.4 |
22,452 | - | fadB | Shew_0019 | 0.66 | +0.8 |
22,707 | + | fadB | Shew_0019 | 0.78 | -0.9 |
22,766 | + | fadB | Shew_0019 | 0.80 | -1.1 |
22,771 | + | fadB | Shew_0019 | 0.81 | -3.4 |
23,389 | + | +0.0 | |||
23,460 | + | +1.2 | |||
23,460 | + | +0.6 | |||
23,468 | - | +0.2 | |||
23,512 | + | +0.4 | |||
23,520 | - | +0.7 | |||
23,552 | + | +0.1 | |||
23,562 | + | +0.0 | |||
23,724 | + | Shew_0020 | 0.17 | -0.4 | |
23,937 | - | Shew_0020 | 0.33 | +0.2 | |
23,986 | - | Shew_0020 | 0.37 | -0.0 | |
24,110 | + | Shew_0020 | 0.46 | +0.1 | |
24,172 | - | Shew_0020 | 0.51 | +0.8 | |
24,177 | - | Shew_0020 | 0.52 | -0.8 |
Or see this region's nucleotide sequence