Strain Fitness in Shewanella loihica PV-4 around Shew_0019

Experiment: Thallium(I) acetate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfadA and fadB are separated by 21 nucleotidesfadB and Shew_0020 are separated by 305 nucleotides Shew_0018: fadA - 3-ketoacyl-CoA thiolase (RefSeq), at 19,854 to 21,017 fadA Shew_0019: fadB - multifunctional fatty acid oxidation complex subunit alpha (RefSeq), at 21,039 to 23,189 fadB Shew_0020: Shew_0020 - proline dipeptidase (RefSeq), at 23,495 to 24,817 _0020 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 20.088 kb on + strand, within fadAat 20.162 kb on + strand, within fadAat 20.297 kb on + strand, within fadAat 20.660 kb on - strand, within fadAat 20.836 kb on - strand, within fadAat 20.916 kb on - strandat 20.981 kb on - strandat 21.160 kb on - strandat 21.160 kb on - strandat 21.192 kb on - strandat 21.216 kb on - strandat 21.369 kb on + strand, within fadBat 21.417 kb on - strand, within fadBat 21.457 kb on + strand, within fadBat 21.544 kb on + strand, within fadBat 21.557 kb on - strand, within fadBat 21.784 kb on - strand, within fadBat 21.855 kb on - strand, within fadBat 21.870 kb on - strand, within fadBat 21.882 kb on - strand, within fadBat 22.031 kb on + strand, within fadBat 22.039 kb on - strand, within fadBat 22.131 kb on - strand, within fadBat 22.131 kb on - strand, within fadBat 22.345 kb on - strand, within fadBat 22.384 kb on + strand, within fadBat 22.452 kb on - strand, within fadBat 22.452 kb on - strand, within fadBat 22.452 kb on - strand, within fadBat 22.707 kb on + strand, within fadBat 22.766 kb on + strand, within fadBat 22.771 kb on + strand, within fadBat 23.389 kb on + strandat 23.460 kb on + strandat 23.460 kb on + strandat 23.468 kb on - strandat 23.512 kb on + strandat 23.520 kb on - strandat 23.552 kb on + strandat 23.562 kb on + strandat 23.724 kb on + strand, within Shew_0020at 23.937 kb on - strand, within Shew_0020at 23.986 kb on - strand, within Shew_0020at 24.110 kb on + strand, within Shew_0020at 24.172 kb on - strand, within Shew_0020at 24.177 kb on - strand, within Shew_0020

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 10 mg/ml
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20,088 + fadA Shew_0018 0.20 -3.1
20,162 + fadA Shew_0018 0.26 -0.5
20,297 + fadA Shew_0018 0.38 -1.9
20,660 - fadA Shew_0018 0.69 +0.3
20,836 - fadA Shew_0018 0.84 -0.1
20,916 - -1.1
20,981 - -0.2
21,160 - -1.5
21,160 - -2.2
21,192 - -1.3
21,216 - -0.5
21,369 + fadB Shew_0019 0.15 -1.6
21,417 - fadB Shew_0019 0.18 -0.8
21,457 + fadB Shew_0019 0.19 -0.8
21,544 + fadB Shew_0019 0.23 -1.8
21,557 - fadB Shew_0019 0.24 -1.7
21,784 - fadB Shew_0019 0.35 -0.9
21,855 - fadB Shew_0019 0.38 -1.5
21,870 - fadB Shew_0019 0.39 -1.0
21,882 - fadB Shew_0019 0.39 +1.8
22,031 + fadB Shew_0019 0.46 -1.8
22,039 - fadB Shew_0019 0.46 -2.0
22,131 - fadB Shew_0019 0.51 -1.3
22,131 - fadB Shew_0019 0.51 -0.8
22,345 - fadB Shew_0019 0.61 +0.7
22,384 + fadB Shew_0019 0.63 -1.7
22,452 - fadB Shew_0019 0.66 -1.2
22,452 - fadB Shew_0019 0.66 -2.4
22,452 - fadB Shew_0019 0.66 +0.8
22,707 + fadB Shew_0019 0.78 -0.9
22,766 + fadB Shew_0019 0.80 -1.1
22,771 + fadB Shew_0019 0.81 -3.4
23,389 + +0.0
23,460 + +1.2
23,460 + +0.6
23,468 - +0.2
23,512 + +0.4
23,520 - +0.7
23,552 + +0.1
23,562 + +0.0
23,724 + Shew_0020 0.17 -0.4
23,937 - Shew_0020 0.33 +0.2
23,986 - Shew_0020 0.37 -0.0
24,110 + Shew_0020 0.46 +0.1
24,172 - Shew_0020 0.51 +0.8
24,177 - Shew_0020 0.52 -0.8

Or see this region's nucleotide sequence