Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2558

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
2,635,532	-	hoxY	Synpcc7942_2556	0.79	+0.1
2,635,537	-	hoxY	Synpcc7942_2556	0.79	-2.5
2,635,549	-	hoxY	Synpcc7942_2556	0.82	-0.3
2,635,643	-				-1.3
2,635,658	+				+0.4
2,635,679	-				+3.5
2,635,734	-	hoxU	Synpcc7942_2557	0.13	-1.5
2,635,752	+	hoxU	Synpcc7942_2557	0.16	+2.5
2,635,782	+	hoxU	Synpcc7942_2557	0.20	+0.5
2,635,790	-	hoxU	Synpcc7942_2557	0.21	+0.6
2,635,795	+	hoxU	Synpcc7942_2557	0.22	-0.4
2,635,795	+	hoxU	Synpcc7942_2557	0.22	+0.9
2,635,795	+	hoxU	Synpcc7942_2557	0.22	+0.7
2,635,803	-	hoxU	Synpcc7942_2557	0.23	+0.1
2,635,803	-	hoxU	Synpcc7942_2557	0.23	+0.4
2,635,803	-	hoxU	Synpcc7942_2557	0.23	+0.1
2,635,803	-	hoxU	Synpcc7942_2557	0.23	-0.6
2,635,852	+	hoxU	Synpcc7942_2557	0.30	-0.0
2,635,860	-	hoxU	Synpcc7942_2557	0.31	-0.1
2,635,860	-	hoxU	Synpcc7942_2557	0.31	-3.1
2,635,860	-	hoxU	Synpcc7942_2557	0.31	+2.2
2,635,860	-	hoxU	Synpcc7942_2557	0.31	+1.8
2,635,867	+	hoxU	Synpcc7942_2557	0.32	+0.7
2,635,886	+	hoxU	Synpcc7942_2557	0.35	+0.4
2,635,886	+	hoxU	Synpcc7942_2557	0.35	+0.8
2,635,894	-	hoxU	Synpcc7942_2557	0.36	-2.6
2,635,894	-	hoxU	Synpcc7942_2557	0.36	-1.1
2,635,936	-	hoxU	Synpcc7942_2557	0.42	-0.2
2,635,972	+	hoxU	Synpcc7942_2557	0.47	-0.5
2,635,973	+	hoxU	Synpcc7942_2557	0.47	-1.8
2,635,973	+				+3.2
2,635,978	+	hoxU	Synpcc7942_2557	0.47	-0.0
2,635,980	-	hoxU	Synpcc7942_2557	0.48	+1.9
2,635,986	+	hoxU	Synpcc7942_2557	0.49	-0.0
2,635,986	-	hoxU	Synpcc7942_2557	0.49	-0.1
2,636,016	+	hoxU	Synpcc7942_2557	0.53	-1.0
2,636,039	+	hoxU	Synpcc7942_2557	0.56	-2.7
2,636,195	+	hoxU	Synpcc7942_2557	0.78	-1.6
2,636,318	+				-0.3
2,636,326	-				-3.0
2,636,340	+				-1.7
2,636,340	+				-2.0
2,636,340	+				-2.2
2,636,360	-				-2.0
2,636,366	+				-2.5
2,636,371	+				-0.1
2,636,384	-				+1.6
2,636,395	-				-0.4
2,636,409	-				-1.8
2,636,411	+				+1.7
2,636,414	-				+3.6
2,636,419	+				-0.2
2,636,419	+				-2.8
2,636,419	+				-1.3
2,636,419	+				+0.2
2,636,419	+				+1.0
2,636,427	-				-1.7
2,636,427	-				+0.8
2,636,427	-				-1.9
2,636,427	-				+0.8
2,636,436	+				+0.9
2,636,439	-				+3.1
2,636,439	-				-1.6
2,636,439	-				-4.1
2,636,440	-				+1.6
2,636,474	-				-1.7
2,636,485	+				+0.9
2,636,503	-				-1.9
2,636,503	-				-1.2
2,636,549	-				-1.5
2,636,595	+				-4.2
2,636,610	+				-3.0
2,636,800	+	nifS	Synpcc7942_2558	0.24	-3.2
2,636,802	-	nifS	Synpcc7942_2558	0.24	-1.7
2,636,810	-	nifS	Synpcc7942_2558	0.25	-1.2
2,636,989	-	nifS	Synpcc7942_2558	0.40	-2.4
2,637,125	+	nifS	Synpcc7942_2558	0.52	-1.5
2,637,140	-	nifS	Synpcc7942_2558	0.53	+3.2
2,637,188	-	nifS	Synpcc7942_2558	0.57	-2.4
2,637,269	+	nifS	Synpcc7942_2558	0.64	-1.9
2,637,316	-	nifS	Synpcc7942_2558	0.68	-0.2
2,637,419	+	nifS	Synpcc7942_2558	0.77	-2.8
2,637,577	+				-2.4
2,637,639	+				+0.4
2,637,697	-				-1.3
2,637,699	+				+1.3
2,637,703	+				+1.9
2,637,713	-				-1.5
2,637,727	+				+1.3
2,637,784	+	rplI	Synpcc7942_2559	0.12	-0.0
2,637,792	-	rplI	Synpcc7942_2559	0.14	-2.1
2,637,833	-	rplI	Synpcc7942_2559	0.22	-3.3
2,637,924	-	rplI	Synpcc7942_2559	0.42	-3.4
2,638,050	+	rplI	Synpcc7942_2559	0.70	-0.3
2,638,058	-	rplI	Synpcc7942_2559	0.71	-2.3
2,638,069	+	rplI	Synpcc7942_2559	0.74	-2.9
2,638,076	+	rplI	Synpcc7942_2559	0.75	+2.6
2,638,077	-	rplI	Synpcc7942_2559	0.76	-3.2
2,638,077	-	rplI	Synpcc7942_2559	0.76	-1.4
2,638,083	-	rplI	Synpcc7942_2559	0.77	-0.5
2,638,115	+	rplI	Synpcc7942_2559	0.84	-1.4
2,638,152	+				-2.6
2,638,198	+				-2.4
2,638,217	+				-2.1
2,638,220	-				-0.6
2,638,235	+				-1.4
2,638,253	-				+0.4
2,638,253	-				+1.7
2,638,266	+				-1.6
2,638,353	-				-3.4
2,638,363	+				-0.5
2,638,366	-				-0.7
2,638,376	-				-3.1
2,638,381	-				-1.3
2,638,381	-				-0.2
2,638,433	-				-0.1
2,638,479	-				-1.6
2,638,480	+				-0.9
2,638,493	-				-0.7
2,638,504	+				+0.1
2,638,512	-				-2.5
2,638,623	+		Synpcc7942_2560	0.26	+0.1
2,638,646	-		Synpcc7942_2560	0.30	-2.0
2,638,668	-		Synpcc7942_2560	0.34	+2.8
2,638,680	-		Synpcc7942_2560	0.36	+2.0