Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1889

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
1,961,016	+				-1.6
1,961,049	-		Synpcc7942_1888	0.19	-0.6
1,961,059	-		Synpcc7942_1888	0.20	-1.5
1,961,066	-		Synpcc7942_1888	0.21	+0.1
1,961,117	+		Synpcc7942_1888	0.26	-0.5
1,961,117	+		Synpcc7942_1888	0.26	-0.9
1,961,117	+		Synpcc7942_1888	0.26	+0.2
1,961,125	+		Synpcc7942_1888	0.26	+1.1
1,961,125	-		Synpcc7942_1888	0.26	-3.7
1,961,125	-		Synpcc7942_1888	0.26	+3.4
1,961,125	-		Synpcc7942_1888	0.26	-2.0
1,961,125	-		Synpcc7942_1888	0.26	-2.2
1,961,125	-		Synpcc7942_1888	0.26	+0.8
1,961,125	-		Synpcc7942_1888	0.26	+0.3
1,961,125	-		Synpcc7942_1888	0.26	+1.9
1,961,125	-		Synpcc7942_1888	0.26	+0.9
1,961,125	-		Synpcc7942_1888	0.26	-1.5
1,961,207	-		Synpcc7942_1888	0.34	-3.0
1,961,270	+		Synpcc7942_1888	0.40	-1.9
1,961,410	+		Synpcc7942_1888	0.54	-0.2
1,961,473	+		Synpcc7942_1888	0.60	-0.0
1,961,517	+		Synpcc7942_1888	0.64	+1.9
1,961,525	-		Synpcc7942_1888	0.65	-3.6
1,961,575	-		Synpcc7942_1888	0.70	+0.0
1,961,632	+		Synpcc7942_1888	0.75	-2.9
1,961,692	-		Synpcc7942_1888	0.81	+2.2
1,961,692	-		Synpcc7942_1888	0.81	+0.8
1,961,692	-		Synpcc7942_1888	0.81	+2.4
1,961,692	-		Synpcc7942_1888	0.81	+2.3
1,961,714	+		Synpcc7942_1888	0.83	-1.3
1,961,714	+		Synpcc7942_1888	0.83	+1.2
1,961,714	+		Synpcc7942_1888	0.83	+1.0
1,961,714	+		Synpcc7942_1888	0.83	-2.9
1,961,722	-		Synpcc7942_1888	0.84	+1.4
1,961,733	-		Synpcc7942_1888	0.85	+1.4
1,961,758	+		Synpcc7942_1888	0.87	+0.9
1,961,808	+				+3.8
1,961,818	+				-1.5
1,961,826	-				-1.9
1,961,863	-				-0.3
1,961,956	+				-2.7
1,961,961	+				+0.4
1,962,088	+				-1.5
1,962,096	+				-3.4
1,962,121	+				-3.1
1,962,129	-				-1.3
1,962,139	+				-1.5
1,962,144	+				-2.1
1,962,144	+				-3.1
1,962,144	+				-1.6
1,962,144	+				-2.6
1,962,144	+				-2.3
1,962,144	+				-2.4
1,962,144	+				-1.3
1,962,144	+				-1.8
1,962,144	+				-1.6
1,962,144	+				-0.9
1,962,144	+				-0.7
1,962,152	-		Synpcc7942_1889	0.10	-3.6
1,962,152	-		Synpcc7942_1889	0.10	-2.2
1,962,152	-		Synpcc7942_1889	0.10	-1.6
1,962,152	-		Synpcc7942_1889	0.10	-2.5
1,962,152	-		Synpcc7942_1889	0.10	-1.2
1,962,152	-		Synpcc7942_1889	0.10	-2.6
1,962,152	-		Synpcc7942_1889	0.10	-0.4
1,962,152	-		Synpcc7942_1889	0.10	+0.1
1,962,152	-		Synpcc7942_1889	0.10	-2.7
1,962,165	-		Synpcc7942_1889	0.11	-1.2
1,962,179	+		Synpcc7942_1889	0.12	-0.7
1,962,245	+		Synpcc7942_1889	0.16	-1.7
1,962,352	+		Synpcc7942_1889	0.23	-3.8
1,962,402	-		Synpcc7942_1889	0.26	-1.3
1,962,406	+		Synpcc7942_1889	0.26	-1.4
1,962,571	+		Synpcc7942_1889	0.37	-0.5
1,962,571	+		Synpcc7942_1889	0.37	-4.3
1,962,579	-		Synpcc7942_1889	0.37	-1.0
1,962,579	-		Synpcc7942_1889	0.37	-2.5
1,962,579	-		Synpcc7942_1889	0.37	-4.0
1,962,579	-		Synpcc7942_1889	0.37	-1.4
1,962,641	+		Synpcc7942_1889	0.41	-3.5
1,962,714	+		Synpcc7942_1889	0.46	-2.9
1,962,732	-		Synpcc7942_1889	0.47	-3.1
1,962,737	+		Synpcc7942_1889	0.47	-4.1
1,962,738	+		Synpcc7942_1889	0.47	-3.6
1,962,738	+		Synpcc7942_1889	0.47	-2.3
1,962,738	+		Synpcc7942_1889	0.47	-1.7
1,962,738	+		Synpcc7942_1889	0.47	-2.5
1,962,741	-		Synpcc7942_1889	0.47	-1.6
1,962,744	+		Synpcc7942_1889	0.47	-0.7
1,962,746	-		Synpcc7942_1889	0.48	-1.6
1,962,766	-		Synpcc7942_1889	0.49	-2.8
1,962,818	+		Synpcc7942_1889	0.52	+0.1
1,962,818	+		Synpcc7942_1889	0.52	-0.3
1,962,818	+		Synpcc7942_1889	0.52	-0.2
1,962,826	-		Synpcc7942_1889	0.53	-3.5
1,962,850	+		Synpcc7942_1889	0.54	-3.5
1,962,877	-		Synpcc7942_1889	0.56	-2.3
1,962,877	-		Synpcc7942_1889	0.56	-1.0
1,962,915	-		Synpcc7942_1889	0.58	-1.8
1,962,925	+		Synpcc7942_1889	0.59	-1.7
1,962,935	+		Synpcc7942_1889	0.59	-4.0
1,962,935	+		Synpcc7942_1889	0.59	-2.8
1,962,935	+		Synpcc7942_1889	0.59	-2.4
1,962,935	+		Synpcc7942_1889	0.59	-0.7
1,962,935	+		Synpcc7942_1889	0.59	-2.1
1,962,937	-		Synpcc7942_1889	0.60	-1.4
1,962,940	+		Synpcc7942_1889	0.60	-2.3
1,962,940	+		Synpcc7942_1889	0.60	-2.2
1,962,940	+		Synpcc7942_1889	0.60	-1.8
1,962,948	-		Synpcc7942_1889	0.60	-1.9
1,962,973	-		Synpcc7942_1889	0.62	-1.7
1,963,011	+		Synpcc7942_1889	0.64	-3.2
1,963,032	-		Synpcc7942_1889	0.65	-2.7
1,963,062	-		Synpcc7942_1889	0.67	-1.7
1,963,072	-		Synpcc7942_1889	0.68	-1.6
1,963,104	+		Synpcc7942_1889	0.70	-3.1
1,963,109	+		Synpcc7942_1889	0.70	-2.2
1,963,131	-		Synpcc7942_1889	0.72	-3.4
1,963,133	-		Synpcc7942_1889	0.72	-0.8
1,963,148	+		Synpcc7942_1889	0.73	-1.8
1,963,156	-		Synpcc7942_1889	0.73	-0.5
1,963,191	+		Synpcc7942_1889	0.75	-1.0
1,963,201	+				+0.3
1,963,216	+		Synpcc7942_1889	0.77	-2.1
1,963,219	+				+0.5
1,963,228	+		Synpcc7942_1889	0.78	-1.1
1,963,235	-		Synpcc7942_1889	0.78	-1.1
1,963,236	-		Synpcc7942_1889	0.78	-1.1
1,963,244	+		Synpcc7942_1889	0.79	-3.1
1,963,244	-		Synpcc7942_1889	0.79	-1.5
1,963,244	-		Synpcc7942_1889	0.79	-2.0
1,963,251	+		Synpcc7942_1889	0.79	-2.3
1,963,251	+		Synpcc7942_1889	0.79	-0.9
1,963,251	+		Synpcc7942_1889	0.79	-3.7
1,963,251	+		Synpcc7942_1889	0.79	+0.3
1,963,251	+		Synpcc7942_1889	0.79	-2.0
1,963,251	+		Synpcc7942_1889	0.79	-2.0
1,963,251	+		Synpcc7942_1889	0.79	-1.6
1,963,251	+		Synpcc7942_1889	0.79	-3.1
1,963,251	+		Synpcc7942_1889	0.79	-0.8
1,963,259	-		Synpcc7942_1889	0.80	-2.7
1,963,259	-		Synpcc7942_1889	0.80	+0.5
1,963,288	+		Synpcc7942_1889	0.82	-1.6
1,963,288	+		Synpcc7942_1889	0.82	-2.8
1,963,288	+		Synpcc7942_1889	0.82	-1.3
1,963,352	-		Synpcc7942_1889	0.86	-0.9
1,963,361	-		Synpcc7942_1889	0.86	-3.4
1,963,377	+		Synpcc7942_1889	0.87	-2.6
1,963,393	+		Synpcc7942_1889	0.88	-4.0
1,963,393	+		Synpcc7942_1889	0.88	-2.5
1,963,401	-		Synpcc7942_1889	0.89	-1.7
1,963,401	-		Synpcc7942_1889	0.89	-1.8
1,963,403	-		Synpcc7942_1889	0.89	-2.9
1,963,419	-		Synpcc7942_1889	0.90	-1.1
1,963,419	-		Synpcc7942_1889	0.90	-1.6
1,963,423	+				-2.3
1,963,448	+				-2.9
1,963,448	+				+0.6
1,963,449	+				-1.1
1,963,456	-				-2.6
1,963,457	-				+1.1
1,963,469	+				-0.3
1,963,469	+				-3.4
1,963,470	-				-1.8
1,963,470	-				-2.2
1,963,477	-				-1.6
1,963,479	-				-1.4
1,963,538	+				-2.4
1,963,538	+				-0.7
1,963,538	+				-2.7
1,963,538	+				-3.6
1,963,538	+				-2.0
1,963,544	-				-4.9
1,963,544	-				-2.5
1,963,546	-				-3.1
1,963,548	-				-1.4
1,963,555	+				+0.2
1,963,555	+				-2.2
1,963,563	-				-3.9
1,963,578	-				-1.4
1,963,628	-				-2.4
1,963,653	-				-3.3
1,963,683	+				+1.9
1,963,686	+				-2.6
1,963,688	+				-2.5
1,963,694	-				+1.4
1,963,696	+				+1.6
1,963,696	+				+1.6
1,963,708	+				+0.8
1,963,708	+				+0.9
1,963,708	+				-1.6
1,963,714	-				-0.9
1,963,716	-				-1.9
1,963,716	-				-0.3
1,963,716	-				-2.0
1,963,716	-				+0.4
1,963,728	+				-2.0
1,963,738	+				+1.7
1,963,738	+				-1.1
1,963,750	-				+1.7
1,963,765	+				+1.7
1,963,765	+				-2.7
1,963,773	-				+1.9
1,963,773	-				-2.3
1,963,788	-				+1.0
1,963,808	-		Synpcc7942_1890	0.12	-2.3
1,963,820	-		Synpcc7942_1890	0.14	+0.5
1,963,836	-		Synpcc7942_1890	0.17	+4.5
1,963,858	-		Synpcc7942_1890	0.22	+3.4
1,963,868	+		Synpcc7942_1890	0.24	-1.7
1,963,876	+		Synpcc7942_1890	0.25	+0.6
1,963,876	-		Synpcc7942_1890	0.25	+0.8
1,963,876	-		Synpcc7942_1890	0.25	+3.7
1,963,877	-		Synpcc7942_1890	0.25	-1.3
1,963,877	-		Synpcc7942_1890	0.25	+0.7
1,963,879	-		Synpcc7942_1890	0.26	+1.8
1,963,882	+		Synpcc7942_1890	0.26	-1.3
1,963,884	-		Synpcc7942_1890	0.27	-0.7
1,963,909	-		Synpcc7942_1890	0.32	+0.4
1,963,936	+		Synpcc7942_1890	0.37	-0.7
1,963,937	+		Synpcc7942_1890	0.37	+1.9
1,963,937	+		Synpcc7942_1890	0.37	-2.3
1,963,945	-		Synpcc7942_1890	0.39	-1.4
1,963,945	-		Synpcc7942_1890	0.39	+0.5
1,963,949	+		Synpcc7942_1890	0.40	-0.5
1,963,949	+		Synpcc7942_1890	0.40	+2.5
1,963,957	-		Synpcc7942_1890	0.41	-3.0
1,963,958	+		Synpcc7942_1890	0.41	+1.6
1,963,979	-		Synpcc7942_1890	0.46	+3.2
1,963,984	-		Synpcc7942_1890	0.47	-0.4
1,963,984	-		Synpcc7942_1890	0.47	+1.6
1,964,008	-		Synpcc7942_1890	0.51	+2.2
1,964,013	-		Synpcc7942_1890	0.52	+2.2
1,964,031	+		Synpcc7942_1890	0.56	+0.1
1,964,043	-		Synpcc7942_1890	0.58	-1.3
1,964,046	+		Synpcc7942_1890	0.59	+0.1
1,964,067	+		Synpcc7942_1890	0.63	+0.1
1,964,071	+		Synpcc7942_1890	0.64	-1.1
1,964,071	+		Synpcc7942_1890	0.64	-0.8
1,964,076	+				-0.7
1,964,076	+		Synpcc7942_1890	0.65	-1.8
1,964,076	+		Synpcc7942_1890	0.65	+0.8
1,964,092	+		Synpcc7942_1890	0.68	-1.4
1,964,100	-		Synpcc7942_1890	0.69	+1.6
1,964,110	+		Synpcc7942_1890	0.71	-0.4
1,964,110	+		Synpcc7942_1890	0.71	+5.2
1,964,118	-		Synpcc7942_1890	0.73	-0.9
1,964,118	-		Synpcc7942_1890	0.73	+0.1
1,964,120	-		Synpcc7942_1890	0.73	+2.8
1,964,184	+		Synpcc7942_1890	0.86	+0.3
1,964,204	-				-0.1
1,964,209	-				-3.6
1,964,210	-				-2.3
1,964,210	-				-1.7
1,964,213	+				+1.1
1,964,215	-				-2.6
1,964,237	-				-1.7
1,964,243	-				+0.7
1,964,301	+				+0.9
1,964,301	+				+3.3
1,964,331	+				-1.6
1,964,366	+				-1.8
1,964,383	-				-0.8
1,964,513	+	labA	Synpcc7942_1891	0.18	-1.5
1,964,546	+	labA	Synpcc7942_1891	0.24	-1.5
1,964,546	+	labA	Synpcc7942_1891	0.24	-4.2
1,964,554	-	labA	Synpcc7942_1891	0.25	+1.6
1,964,554	-	labA	Synpcc7942_1891	0.25	-3.4