Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1876

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
1,947,217	+		Synpcc7942_1875	0.37	-2.8
1,947,219	-		Synpcc7942_1875	0.37	-1.1
1,947,289	+		Synpcc7942_1875	0.42	-3.1
1,947,303	-		Synpcc7942_1875	0.43	-1.7
1,947,303	-		Synpcc7942_1875	0.43	-1.2
1,947,310	-		Synpcc7942_1875	0.43	-1.3
1,947,312	+		Synpcc7942_1875	0.44	-1.7
1,947,336	-		Synpcc7942_1875	0.45	-0.9
1,947,336	-		Synpcc7942_1875	0.45	-0.9
1,947,352	+		Synpcc7942_1875	0.46	+0.1
1,947,352	+		Synpcc7942_1875	0.46	-1.4
1,947,360	-		Synpcc7942_1875	0.47	-1.6
1,947,398	-		Synpcc7942_1875	0.50	-2.0
1,947,463	+		Synpcc7942_1875	0.54	-0.3
1,947,468	+		Synpcc7942_1875	0.55	-3.1
1,947,468	+		Synpcc7942_1875	0.55	-4.2
1,947,468	+		Synpcc7942_1875	0.55	-4.3
1,947,471	-		Synpcc7942_1875	0.55	+0.3
1,947,471	-		Synpcc7942_1875	0.55	-1.6
1,947,471	-		Synpcc7942_1875	0.55	+2.1
1,947,471	-		Synpcc7942_1875	0.55	-1.4
1,947,473	+		Synpcc7942_1875	0.55	+0.3
1,947,473	+		Synpcc7942_1875	0.55	-0.7
1,947,473	+		Synpcc7942_1875	0.55	-0.9
1,947,476	-		Synpcc7942_1875	0.55	+2.2
1,947,476	-		Synpcc7942_1875	0.55	-2.7
1,947,481	-		Synpcc7942_1875	0.56	-1.8
1,947,481	-		Synpcc7942_1875	0.56	-1.1
1,947,481	-		Synpcc7942_1875	0.56	-0.8
1,947,481	-		Synpcc7942_1875	0.56	-0.9
1,947,481	-		Synpcc7942_1875	0.56	-1.6
1,947,486	-		Synpcc7942_1875	0.56	-2.2
1,947,521	+		Synpcc7942_1875	0.59	-1.3
1,947,533	+		Synpcc7942_1875	0.59	-3.4
1,947,541	-		Synpcc7942_1875	0.60	-2.1
1,947,541	-		Synpcc7942_1875	0.60	-3.3
1,947,550	+		Synpcc7942_1875	0.61	-1.5
1,947,587	+		Synpcc7942_1875	0.63	-2.6
1,947,590	-		Synpcc7942_1875	0.63	-1.5
1,947,595	+		Synpcc7942_1875	0.64	-1.1
1,947,595	-		Synpcc7942_1875	0.64	-0.5
1,947,595	-		Synpcc7942_1875	0.64	-1.3
1,947,595	-		Synpcc7942_1875	0.64	+0.5
1,947,595	-		Synpcc7942_1875	0.64	-1.5
1,947,595	-		Synpcc7942_1875	0.64	-2.8
1,947,597	+		Synpcc7942_1875	0.64	-2.3
1,947,605	-		Synpcc7942_1875	0.65	-0.5
1,947,612	+		Synpcc7942_1875	0.65	-1.6
1,947,620	-		Synpcc7942_1875	0.66	-2.6
1,947,620	-		Synpcc7942_1875	0.66	-1.9
1,947,644	-		Synpcc7942_1875	0.67	-1.1
1,947,662	+		Synpcc7942_1875	0.69	-1.8
1,947,679	-		Synpcc7942_1875	0.70	-0.5
1,947,699	-		Synpcc7942_1875	0.71	-4.1
1,947,704	+		Synpcc7942_1875	0.72	-0.5
1,947,704	+		Synpcc7942_1875	0.72	-3.0
1,947,712	-		Synpcc7942_1875	0.72	-3.5
1,947,730	-		Synpcc7942_1875	0.73	-1.1
1,947,818	-		Synpcc7942_1875	0.80	+0.1
1,947,829	+		Synpcc7942_1875	0.81	-2.3
1,947,923	+		Synpcc7942_1875	0.87	-1.4
1,947,968	-				-2.5
1,947,993	+				-2.4
1,948,043	+				-2.4
1,948,051	-				-2.0
1,948,080	-				-3.0
1,948,098	+				-1.9
1,948,098	+				-0.9
1,948,106	-				-2.4
1,948,106	-				-2.9
1,948,111	-				-1.5
1,948,111	-				+0.6
1,948,133	-				-0.5
1,948,183	-				-3.6
1,948,201	+				-1.1
1,948,208	-				-3.1
1,948,209	-				+0.4
1,948,221	+				-1.3
1,948,239	+				-3.2
1,948,257	-		Synpcc7942_1876	0.14	-0.7
1,948,311	+		Synpcc7942_1876	0.28	-3.8
1,948,311	+		Synpcc7942_1876	0.28	-2.6
1,948,316	+		Synpcc7942_1876	0.30	-2.4
1,948,322	-		Synpcc7942_1876	0.31	-1.1
1,948,356	-		Synpcc7942_1876	0.40	-1.6
1,948,356	-		Synpcc7942_1876	0.40	-3.3
1,948,373	+		Synpcc7942_1876	0.45	-3.5
1,948,381	-		Synpcc7942_1876	0.47	+0.8
1,948,396	+		Synpcc7942_1876	0.51	-3.7
1,948,398	+		Synpcc7942_1876	0.51	-2.3
1,948,398	+		Synpcc7942_1876	0.51	-3.2
1,948,398	+		Synpcc7942_1876	0.51	-0.9
1,948,398	+		Synpcc7942_1876	0.51	-3.0
1,948,398	+		Synpcc7942_1876	0.51	-1.5
1,948,398	+		Synpcc7942_1876	0.51	-1.5
1,948,398	+		Synpcc7942_1876	0.51	+0.7
1,948,406	-		Synpcc7942_1876	0.53	-1.7
1,948,406	-		Synpcc7942_1876	0.53	-2.5
1,948,406	-		Synpcc7942_1876	0.53	-2.9
1,948,406	-		Synpcc7942_1876	0.53	+0.1
1,948,406	-		Synpcc7942_1876	0.53	-0.3
1,948,406	-		Synpcc7942_1876	0.53	-0.8
1,948,486	-		Synpcc7942_1876	0.74	-1.4
1,948,488	+		Synpcc7942_1876	0.75	-0.7
1,948,525	+		Synpcc7942_1876	0.85	-2.9
1,948,574	+				-1.3
1,948,580	+				-0.7
1,948,580	+				-1.3
1,948,582	-				-1.9
1,948,635	-				-2.1
1,948,663	-				-3.3
1,948,670	-				-1.5
1,948,675	-				-3.0
1,948,682	+				-1.4
1,948,688	+				+0.3
1,948,698	-				+0.7
1,948,707	-				-0.5
1,948,745	+				-0.6
1,948,745	+				-1.3
1,948,745	+				-1.0
1,948,750	+				+2.9
1,948,753	-				+2.5
1,948,765	-				-2.7
1,948,765	-				+0.1
1,948,765	-				-2.2
1,948,765	-				+1.3
1,948,768	-				+2.8
1,948,768	-				+0.6
1,948,788	-				+1.8
1,948,793	+				+1.8
1,948,793	+				-1.8
1,948,801	-				+1.7
1,948,801	-				-0.5
1,948,801	-				-0.7
1,948,801	-				-0.5
1,948,801	-				-1.6
1,948,821	+				+2.1
1,948,821	+				-0.8
1,948,826	+				-0.2
1,948,829	-				-2.5
1,948,833	-				-1.4
1,948,834	-				-1.2
1,948,850	+				-2.0
1,948,851	-				+2.3
1,948,868	+		Synpcc7942_1877	0.10	-3.5
1,948,870	-		Synpcc7942_1877	0.10	-2.0
1,948,876	-		Synpcc7942_1877	0.11	-1.7
1,948,893	+		Synpcc7942_1877	0.12	+0.4
1,948,893	+		Synpcc7942_1877	0.12	+3.7
1,948,901	-		Synpcc7942_1877	0.12	-1.8
1,948,901	-		Synpcc7942_1877	0.12	+3.1
1,948,901	-		Synpcc7942_1877	0.12	+1.5
1,948,901	-		Synpcc7942_1877	0.12	-0.9
1,948,901	-		Synpcc7942_1877	0.12	+1.6
1,948,908	+		Synpcc7942_1877	0.12	+2.8
1,948,908	+		Synpcc7942_1877	0.12	+1.8
1,948,916	-		Synpcc7942_1877	0.13	+0.1
1,948,916	-		Synpcc7942_1877	0.13	-0.2
1,948,920	-		Synpcc7942_1877	0.13	-2.1
1,948,927	+		Synpcc7942_1877	0.13	+1.7
1,948,957	+		Synpcc7942_1877	0.15	-0.4
1,948,965	-		Synpcc7942_1877	0.15	+0.9
1,948,975	+		Synpcc7942_1877	0.16	+2.3
1,948,990	+		Synpcc7942_1877	0.16	+0.6
1,948,990	+		Synpcc7942_1877	0.16	+1.5
1,948,990	+		Synpcc7942_1877	0.16	+0.9
1,948,998	-		Synpcc7942_1877	0.17	+2.8
1,948,998	-		Synpcc7942_1877	0.17	-2.2
1,948,998	-		Synpcc7942_1877	0.17	+1.9
1,949,004	+		Synpcc7942_1877	0.17	-1.0
1,949,013	+		Synpcc7942_1877	0.18	+0.2
1,949,020	-		Synpcc7942_1877	0.18	+1.8
1,949,020	-		Synpcc7942_1877	0.18	+0.3
1,949,021	-		Synpcc7942_1877	0.18	+4.4
1,949,021	-		Synpcc7942_1877	0.18	+1.1
1,949,081	-		Synpcc7942_1877	0.21	+3.7
1,949,104	+		Synpcc7942_1877	0.22	+3.0
1,949,113	-		Synpcc7942_1877	0.23	+1.2
1,949,122	-		Synpcc7942_1877	0.23	-0.3
1,949,133	+		Synpcc7942_1877	0.24	+2.2
1,949,143	+		Synpcc7942_1877	0.24	+1.7
1,949,143	+		Synpcc7942_1877	0.24	-1.7
1,949,143	+		Synpcc7942_1877	0.24	+1.7
1,949,151	-		Synpcc7942_1877	0.25	+1.9
1,949,151	-		Synpcc7942_1877	0.25	+3.2
1,949,151	-		Synpcc7942_1877	0.25	+0.4
1,949,156	+		Synpcc7942_1877	0.25	-0.6
1,949,156	-		Synpcc7942_1877	0.25	-1.3
1,949,167	-		Synpcc7942_1877	0.25	+1.7
1,949,177	+		Synpcc7942_1877	0.26	-2.5
1,949,196	-		Synpcc7942_1877	0.27	-0.3
1,949,196	-		Synpcc7942_1877	0.27	+2.4
1,949,198	+		Synpcc7942_1877	0.27	-1.6
1,949,216	+		Synpcc7942_1877	0.28	+1.5
1,949,217	-		Synpcc7942_1877	0.28	+5.0
1,949,226	+		Synpcc7942_1877	0.28	-0.4
1,949,226	+		Synpcc7942_1877	0.28	-0.7
1,949,226	+		Synpcc7942_1877	0.28	+0.9
1,949,269	+		Synpcc7942_1877	0.30	+1.5
1,949,269	+		Synpcc7942_1877	0.30	+1.9
1,949,282	+		Synpcc7942_1877	0.31	+1.3
1,949,289	+		Synpcc7942_1877	0.31	-0.9
1,949,297	-		Synpcc7942_1877	0.32	-0.9
1,949,297	-		Synpcc7942_1877	0.32	+0.6
1,949,302	-		Synpcc7942_1877	0.32	+0.7
1,949,307	-		Synpcc7942_1877	0.32	+0.5
1,949,316	+		Synpcc7942_1877	0.33	-0.3
1,949,321	+		Synpcc7942_1877	0.33	+0.7
1,949,322	-		Synpcc7942_1877	0.33	+3.4
1,949,332	-		Synpcc7942_1877	0.34	+1.1
1,949,334	-		Synpcc7942_1877	0.34	+1.1
1,949,388	+		Synpcc7942_1877	0.36	+1.8
1,949,430	-		Synpcc7942_1877	0.38	+0.7
1,949,430	-		Synpcc7942_1877	0.38	+3.2
1,949,474	-		Synpcc7942_1877	0.41	+1.4
1,949,476	+				-1.1
1,949,491	-		Synpcc7942_1877	0.41	+3.3
1,949,496	-		Synpcc7942_1877	0.42	-0.2
1,949,508	-		Synpcc7942_1877	0.42	+1.5
1,949,508	-		Synpcc7942_1877	0.42	+1.8
1,949,530	+		Synpcc7942_1877	0.43	-1.7
1,949,532	-				-2.1
1,949,535	+		Synpcc7942_1877	0.44	+1.2
1,949,543	-		Synpcc7942_1877	0.44	+1.9
1,949,545	+		Synpcc7942_1877	0.44	+2.8
1,949,548	-		Synpcc7942_1877	0.44	+0.2
1,949,550	+		Synpcc7942_1877	0.44	-0.0
1,949,550	+		Synpcc7942_1877	0.44	+1.9